(21 nodes) Late endosome to vacuole transport network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XYM7_BRAFL	Uncharacterized protein. (1314 aa)
	C3XTU6_BRAFL	Uncharacterized protein. (211 aa)
	C3XUB7_BRAFL	Uncharacterized protein. (201 aa)
	C3XVY6_BRAFL	Uncharacterized protein. (163 aa)
	C3Y3K6_BRAFL	GLUE N-terminal domain-containing protein. (392 aa)
	C3Y5U4_BRAFL	Uncharacterized protein. (1422 aa)
	C3YEM3_BRAFL	Uncharacterized protein. (481 aa)
	C3YHW5_BRAFL	Uncharacterized protein. (222 aa)
	C3YTG4_BRAFL	Uncharacterized protein. (129 aa)
	C3YWT1_BRAFL	Uncharacterized protein. (185 aa)
	C3YX16_BRAFL	Uncharacterized protein. (278 aa)
	C3YXI8_BRAFL	Uncharacterized protein. (289 aa)
	C3YYU3_BRAFL	Uncharacterized protein. (173 aa)
	C3Z6I2_BRAFL	Uncharacterized protein. (227 aa)
	C3ZCF7_BRAFL	Uncharacterized protein. (199 aa)
	C3ZD31_BRAFL	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (218 aa)
	C3ZFF9_BRAFL	Uncharacterized protein. (170 aa)
	C3ZHM1_BRAFL	Uncharacterized protein. (225 aa)
	C3ZS91_BRAFL	Uncharacterized protein. (159 aa)
	C3ZT96_BRAFL	Uncharacterized protein. (1672 aa)
	C3ZYW7_BRAFL	Uncharacterized protein. (1334 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTU6_BRAFL	C3XUB7_BRAFL	C3XTU6	C3XUB7	Uncharacterized protein.	Uncharacterized protein.	0.947
C3XTU6_BRAFL	C3Y3K6_BRAFL	C3XTU6	C3Y3K6	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.944
C3XTU6_BRAFL	C3Y5U4_BRAFL	C3XTU6	C3Y5U4	Uncharacterized protein.	Uncharacterized protein.	0.966
C3XTU6_BRAFL	C3YHW5_BRAFL	C3XTU6	C3YHW5	Uncharacterized protein.	Uncharacterized protein.	0.983
C3XTU6_BRAFL	C3YWT1_BRAFL	C3XTU6	C3YWT1	Uncharacterized protein.	Uncharacterized protein.	0.994
C3XTU6_BRAFL	C3YX16_BRAFL	C3XTU6	C3YX16	Uncharacterized protein.	Uncharacterized protein.	0.774
C3XTU6_BRAFL	C3YXI8_BRAFL	C3XTU6	C3YXI8	Uncharacterized protein.	Uncharacterized protein.	0.774
C3XTU6_BRAFL	C3YYU3_BRAFL	C3XTU6	C3YYU3	Uncharacterized protein.	Uncharacterized protein.	0.970
C3XTU6_BRAFL	C3Z6I2_BRAFL	C3XTU6	C3Z6I2	Uncharacterized protein.	Uncharacterized protein.	0.995
C3XTU6_BRAFL	C3ZCF7_BRAFL	C3XTU6	C3ZCF7	Uncharacterized protein.	Uncharacterized protein.	0.947
C3XTU6_BRAFL	C3ZD31_BRAFL	C3XTU6	C3ZD31	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.952
C3XTU6_BRAFL	C3ZFF9_BRAFL	C3XTU6	C3ZFF9	Uncharacterized protein.	Uncharacterized protein.	0.947
C3XTU6_BRAFL	C3ZHM1_BRAFL	C3XTU6	C3ZHM1	Uncharacterized protein.	Uncharacterized protein.	0.982
C3XTU6_BRAFL	C3ZS91_BRAFL	C3XTU6	C3ZS91	Uncharacterized protein.	Uncharacterized protein.	0.945
C3XTU6_BRAFL	C3ZT96_BRAFL	C3XTU6	C3ZT96	Uncharacterized protein.	Uncharacterized protein.	0.943
C3XUB7_BRAFL	C3XTU6_BRAFL	C3XUB7	C3XTU6	Uncharacterized protein.	Uncharacterized protein.	0.947
C3XUB7_BRAFL	C3Y3K6_BRAFL	C3XUB7	C3Y3K6	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.714
C3XUB7_BRAFL	C3Y5U4_BRAFL	C3XUB7	C3Y5U4	Uncharacterized protein.	Uncharacterized protein.	0.720
C3XUB7_BRAFL	C3YHW5_BRAFL	C3XUB7	C3YHW5	Uncharacterized protein.	Uncharacterized protein.	0.885
C3XUB7_BRAFL	C3YWT1_BRAFL	C3XUB7	C3YWT1	Uncharacterized protein.	Uncharacterized protein.	0.771