(49 nodes) Phagocytic vesicle network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZS01_BRAFL	RAS oncogene protein. (237 aa)
	C3XZV0_BRAFL	Uncharacterized protein. (887 aa)
	C3Y041_BRAFL	Uncharacterized protein. (701 aa)
	C3Y0C3_BRAFL	Uncharacterized protein. (516 aa)
	C3ZSY6_BRAFL	TIR domain-containing protein. (160 aa)
	C3ZTG4_BRAFL	Uncharacterized protein. (215 aa)
	C3ZWR5_BRAFL	TIR domain-containing protein. (141 aa)
	C3ZWY9_BRAFL	TIR domain-containing protein. (116 aa)
	C3ZWZ0_BRAFL	TIR domain-containing protein. (99 aa)
	C3ZXT6_BRAFL	Uncharacterized protein. (162 aa)
	C3Y4F2_BRAFL	TIR domain-containing protein. (554 aa)
	C3YL87_BRAFL	Uncharacterized protein. (135 aa)
	C3YL25_BRAFL	TIR domain-containing protein. (332 aa)
	C3YKX3_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (206 aa)
	C3YFJ1_BRAFL	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (210 aa)
	C3YDX8_BRAFL	Uncharacterized protein. (217 aa)
	C3YC85_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (217 aa)
	C3YA80_BRAFL	Uncharacterized protein. (144 aa)
	C3Y8H3_BRAFL	Uncharacterized protein. (180 aa)
	C3Y6B2_BRAFL	Uncharacterized protein. (1975 aa)
	C3YXJ2_BRAFL	Rho-GAP domain-containing protein. (531 aa)
	C3YXJ4_BRAFL	IPPc domain-containing protein. (199 aa)
	C3YXT0_BRAFL	Uncharacterized protein. (694 aa)
	C3YYJ0_BRAFL	Uncharacterized protein. (2116 aa)
	C3YZU1_BRAFL	Uncharacterized protein. (500 aa)
	C3Z5U7_BRAFL	Uncharacterized protein. (648 aa)
	C3Z6K0_BRAFL	Uncharacterized protein. (269 aa)
	C3Z6Q7_BRAFL	TIR domain-containing protein. (314 aa)
	C3YW66_BRAFL	Ras-related protein rab-9a. (180 aa)
	C3YV50_BRAFL	Uncharacterized protein. (208 aa)
	C3YRV4_BRAFL	Uncharacterized protein. (198 aa)
	C3YRU5_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	C3YPS8_BRAFL	Uncharacterized protein. (712 aa)
	C3YLZ4_BRAFL	Uncharacterized protein. (88 aa)
	C3YLR1_BRAFL	Uncharacterized protein. (188 aa)
	C3YL88_BRAFL	Uncharacterized protein. (980 aa)
	C3Z838_BRAFL	TIR domain-containing protein. (684 aa)
	C3Z839_BRAFL	TIR domain-containing protein. (295 aa)
	C3Z844_BRAFL	TIR domain-containing protein. (575 aa)
	C3Z904_BRAFL	Uncharacterized protein. (205 aa)
	C3Y1V6_BRAFL	Phosphatidylinositol 3-kinase catalytic subunit type 3. (890 aa)
	C3ZA99_BRAFL	Uncharacterized protein. (557 aa)
	C3ZC01_BRAFL	Uncharacterized protein. (164 aa)
	C3ZE24_BRAFL	Uncharacterized protein. (303 aa)
	C3ZEI0_BRAFL	Uncharacterized protein. (246 aa)
	C3ZG74_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (232 aa)
	C3ZLL3_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1049 aa)
	C3ZLL7_BRAFL	DUF3385 domain-containing protein. (1400 aa)
	C3ZMF8_BRAFL	Uncharacterized protein. (677 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XZV0_BRAFL	C3YLZ4_BRAFL	C3XZV0	C3YLZ4	Uncharacterized protein.	Uncharacterized protein.	0.483
C3XZV0_BRAFL	C3ZEI0_BRAFL	C3XZV0	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3Y041_BRAFL	C3YLZ4_BRAFL	C3Y041	C3YLZ4	Uncharacterized protein.	Uncharacterized protein.	0.483
C3Y041_BRAFL	C3ZEI0_BRAFL	C3Y041	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3Y0C3_BRAFL	C3Y1V6_BRAFL	C3Y0C3	C3Y1V6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.997
C3Y0C3_BRAFL	C3Y6B2_BRAFL	C3Y0C3	C3Y6B2	Uncharacterized protein.	Uncharacterized protein.	0.830
C3Y0C3_BRAFL	C3ZE24_BRAFL	C3Y0C3	C3ZE24	Uncharacterized protein.	Uncharacterized protein.	0.716
C3Y1V6_BRAFL	C3Y0C3_BRAFL	C3Y1V6	C3Y0C3	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.997
C3Y1V6_BRAFL	C3Y6B2_BRAFL	C3Y1V6	C3Y6B2	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.867
C3Y1V6_BRAFL	C3YV50_BRAFL	C3Y1V6	C3YV50	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.504
C3Y1V6_BRAFL	C3YYJ0_BRAFL	C3Y1V6	C3YYJ0	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.697
C3Y1V6_BRAFL	C3ZC01_BRAFL	C3Y1V6	C3ZC01	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.504
C3Y1V6_BRAFL	C3ZE24_BRAFL	C3Y1V6	C3ZE24	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.991
C3Y1V6_BRAFL	C3ZEI0_BRAFL	C3Y1V6	C3ZEI0	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.424
C3Y6B2_BRAFL	C3Y0C3_BRAFL	C3Y6B2	C3Y0C3	Uncharacterized protein.	Uncharacterized protein.	0.830
C3Y6B2_BRAFL	C3Y1V6_BRAFL	C3Y6B2	C3Y1V6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.867
C3Y6B2_BRAFL	C3ZE24_BRAFL	C3Y6B2	C3ZE24	Uncharacterized protein.	Uncharacterized protein.	0.711
C3YA80_BRAFL	C3YV50_BRAFL	C3YA80	C3YV50	Uncharacterized protein.	Uncharacterized protein.	0.445
C3YC85_BRAFL	C3YKX3_BRAFL	C3YC85	C3YKX3	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.838
C3YC85_BRAFL	C3YRU5_BRAFL	C3YC85	C3YRU5	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.912