(56 nodes) Positive regulation of translation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YJQ3_BRAFL	Uncharacterized protein. (459 aa)
	C3YJC4_BRAFL	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (193 aa)
	C3YIR4_BRAFL	Uncharacterized protein. (147 aa)
	C3YIF6_BRAFL	MIF4G domain-containing protein. (470 aa)
	C3YFD7_BRAFL	Uncharacterized protein; Belongs to the MT-A70-like family. (568 aa)
	C3YDD4_BRAFL	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (447 aa)
	C3YAV4_BRAFL	Uncharacterized protein. (122 aa)
	C3Y877_BRAFL	Uncharacterized protein. (113 aa)
	C3Y721_BRAFL	Eukaryotic translation initiation factor 5A. (143 aa)
	C3Y5I7_BRAFL	Uncharacterized protein. (720 aa)
	C3Y4H9_BRAFL	RRM domain-containing protein. (413 aa)
	C3Y4H8_BRAFL	RRM domain-containing protein. (447 aa)
	C3Y4C4_BRAFL	MTS domain-containing protein. (212 aa)
	C3Y332_BRAFL	Uncharacterized protein. (1237 aa)
	C3XY37_BRAFL	Uncharacterized protein; Belongs to the complex I LYR family. (69 aa)
	C3XWC3_BRAFL	HTH La-type RNA-binding domain-containing protein. (1017 aa)
	C3XWB6_BRAFL	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (518 aa)
	C3XV24_BRAFL	PseudoU_synth_2 domain-containing protein. (335 aa)
	C3XUN8_BRAFL	W2 domain-containing protein. (673 aa)
	C3XUC8_BRAFL	RWD domain-containing protein. (270 aa)
	C3XRZ6_BRAFL	Uncharacterized protein. (1538 aa)
	C3XPY9_BRAFL	Protein kinase domain-containing protein. (347 aa)
	C3XPX8_BRAFL	RPOL4c domain-containing protein. (142 aa)
	C3XPN3_BRAFL	Uncharacterized protein. (954 aa)
	C3XPM8_BRAFL	W2 domain-containing protein. (593 aa)
	C3XPM7_BRAFL	Uncharacterized protein. (379 aa)
	C3XPM6_BRAFL	Uncharacterized protein. (703 aa)
	EIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	C3ZTH9_BRAFL	MIF4G domain-containing protein. (190 aa)
	C3ZQZ0_BRAFL	Uncharacterized protein. (172 aa)
	C3ZNT9_BRAFL	Tr-type G domain-containing protein. (478 aa)
	C3ZNQ8_BRAFL	Uncharacterized protein. (514 aa)
	C3ZLL7_BRAFL	DUF3385 domain-containing protein. (1400 aa)
	C3ZLL3_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1049 aa)
	C3ZKS9_BRAFL	Uncharacterized protein. (1516 aa)
	C3ZIA7_BRAFL	Helicase C-terminal domain-containing protein. (118 aa)
	C3ZF64_BRAFL	Smg4_UPF3 domain-containing protein. (529 aa)
	C3ZEH7_BRAFL	Uncharacterized protein. (527 aa)
	C3ZBF3_BRAFL	Uncharacterized protein. (975 aa)
	C3ZB81_BRAFL	Uncharacterized protein. (946 aa)
	C3ZAS4_BRAFL	WW domain-containing protein. (781 aa)
	C3Z9D3_BRAFL	Uncharacterized protein. (281 aa)
	C3Z996_BRAFL	Uncharacterized protein. (280 aa)
	C3Z802_BRAFL	Uncharacterized protein. (1181 aa)
	C3Z7P9_BRAFL	Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs. (543 aa)
	C3Z6Q8_BRAFL	MIF4G domain-containing protein. (380 aa)
	C3Z6B0_BRAFL	Uncharacterized protein. (326 aa)
	C3Z2E9_BRAFL	Uncharacterized protein. (473 aa)
	C3YZB4_BRAFL	Uncharacterized protein. (1463 aa)
	C3YVP2_BRAFL	Uncharacterized protein. (171 aa)
	C3YVI6_BRAFL	Uncharacterized protein. (418 aa)
	C3YV22_BRAFL	PCIF1_WW domain-containing protein. (730 aa)
	C3YU77_BRAFL	TruB_N domain-containing protein. (261 aa)
	C3YQF0_BRAFL	YTH domain-containing protein. (559 aa)
	C3YN69_BRAFL	SAM-dependent MTase TRM10-type domain-containing protein. (230 aa)
	C3YL02_BRAFL	RAP domain-containing protein. (653 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPM6_BRAFL	C3XPM7_BRAFL	C3XPM6	C3XPM7	Uncharacterized protein.	Uncharacterized protein.	0.961
C3XPM6_BRAFL	C3XPM8_BRAFL	C3XPM6	C3XPM8	Uncharacterized protein.	W2 domain-containing protein.	0.600
C3XPM6_BRAFL	C3XPN3_BRAFL	C3XPM6	C3XPN3	Uncharacterized protein.	Uncharacterized protein.	0.574
C3XPM6_BRAFL	C3XWC3_BRAFL	C3XPM6	C3XWC3	Uncharacterized protein.	HTH La-type RNA-binding domain-containing protein.	0.460
C3XPM6_BRAFL	C3YDD4_BRAFL	C3XPM6	C3YDD4	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.568
C3XPM6_BRAFL	C3Z7P9_BRAFL	C3XPM6	C3Z7P9	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs.	0.562
C3XPM6_BRAFL	C3ZNT9_BRAFL	C3XPM6	C3ZNT9	Uncharacterized protein.	Tr-type G domain-containing protein.	0.500
C3XPM7_BRAFL	C3XPM6_BRAFL	C3XPM7	C3XPM6	Uncharacterized protein.	Uncharacterized protein.	0.961
C3XPM7_BRAFL	C3XPM8_BRAFL	C3XPM7	C3XPM8	Uncharacterized protein.	W2 domain-containing protein.	0.559
C3XPM7_BRAFL	C3XPN3_BRAFL	C3XPM7	C3XPN3	Uncharacterized protein.	Uncharacterized protein.	0.543
C3XPM7_BRAFL	C3XWC3_BRAFL	C3XPM7	C3XWC3	Uncharacterized protein.	HTH La-type RNA-binding domain-containing protein.	0.460
C3XPM7_BRAFL	C3YDD4_BRAFL	C3XPM7	C3YDD4	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.568
C3XPM7_BRAFL	C3Z7P9_BRAFL	C3XPM7	C3Z7P9	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs.	0.562
C3XPM7_BRAFL	C3ZNT9_BRAFL	C3XPM7	C3ZNT9	Uncharacterized protein.	Tr-type G domain-containing protein.	0.500
C3XPM8_BRAFL	C3XPM6_BRAFL	C3XPM8	C3XPM6	W2 domain-containing protein.	Uncharacterized protein.	0.600
C3XPM8_BRAFL	C3XPM7_BRAFL	C3XPM8	C3XPM7	W2 domain-containing protein.	Uncharacterized protein.	0.559
C3XPM8_BRAFL	C3XPN3_BRAFL	C3XPM8	C3XPN3	W2 domain-containing protein.	Uncharacterized protein.	0.564
C3XPM8_BRAFL	C3XWC3_BRAFL	C3XPM8	C3XWC3	W2 domain-containing protein.	HTH La-type RNA-binding domain-containing protein.	0.460
C3XPM8_BRAFL	C3YDD4_BRAFL	C3XPM8	C3YDD4	W2 domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.568
C3XPM8_BRAFL	C3Z7P9_BRAFL	C3XPM8	C3Z7P9	W2 domain-containing protein.	Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs.	0.562