(43 nodes) Regulation of embryonic development network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YK34_BRAFL	Uncharacterized protein. (2326 aa)
	C3ZZE0_BRAFL	Uncharacterized protein. (669 aa)
	C3ZZD9_BRAFL	Uncharacterized protein. (49 aa)
	C3ZXE5_BRAFL	Uncharacterized protein. (561 aa)
	C3ZTG4_BRAFL	Uncharacterized protein. (215 aa)
	C3ZQ69_BRAFL	Uncharacterized protein. (1679 aa)
	C3ZMU1_BRAFL	Uncharacterized protein. (1878 aa)
	C3ZIA7_BRAFL	Helicase C-terminal domain-containing protein. (118 aa)
	C3ZI58_BRAFL	Uncharacterized protein. (1219 aa)
	C3ZI57_BRAFL	Uncharacterized protein. (2142 aa)
	C3ZHW5_BRAFL	SGF29 C-terminal domain-containing protein. (339 aa)
	C3ZG27_BRAFL	Ubiquitin carboxyl-terminal hydrolase. (300 aa)
	C3ZFY4_BRAFL	CBFD_NFYB_HMF domain-containing protein. (173 aa)
	C3ZFC3_BRAFL	Laminin EGF-like domain-containing protein. (214 aa)
	C3ZEZ9_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (291 aa)
	C3ZCS9_BRAFL	Uncharacterized protein. (2475 aa)
	C3ZCS7_BRAFL	Uncharacterized protein. (3505 aa)
	C3Z9G3_BRAFL	Ubiquitin-like domain-containing protein. (1268 aa)
	C3Z809_BRAFL	Uncharacterized protein. (720 aa)
	C3Z3T2_BRAFL	Uncharacterized protein. (172 aa)
	C3YYL7_BRAFL	MCRS_N domain-containing protein. (235 aa)
	C3YYL6_BRAFL	FHA domain-containing protein. (204 aa)
	C3YV90_BRAFL	Uncharacterized protein. (786 aa)
	C3YUI0_BRAFL	CAP10 domain-containing protein. (351 aa)
	C3YUG6_BRAFL	CAP10 domain-containing protein. (351 aa)
	C3YU49_BRAFL	Uncharacterized protein. (889 aa)
	C3YQW8_BRAFL	Uncharacterized protein. (536 aa)
	C3YPI7_BRAFL	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (305 aa)
	C3YLR7_BRAFL	Uncharacterized protein. (740 aa)
	C3Y9J6_BRAFL	HMG box domain-containing protein. (334 aa)
	C3Y6U5_BRAFL	Uncharacterized protein. (360 aa)
	C3Y6A4_BRAFL	RuvB-like helicase; Belongs to the RuvB family. (468 aa)
	C3Y4C7_BRAFL	Uncharacterized protein. (1023 aa)
	C3Y3B0_BRAFL	Endo/exonuclease/phosphatase domain-containing protein. (429 aa)
	C3Y1Z3_BRAFL	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (367 aa)
	C3Y1K4_BRAFL	Uncharacterized protein. (2173 aa)
	C3Y1K1_BRAFL	Uncharacterized protein. (1014 aa)
	C3Y0Y4_BRAFL	NFRKB_winged domain-containing protein. (1283 aa)
	C3XVD1_BRAFL	Uncharacterized protein. (3715 aa)
	C3XVA0_BRAFL	Uncharacterized protein. (843 aa)
	C3XSK4_BRAFL	Uncharacterized protein. (961 aa)
	C3XRU4_BRAFL	PH domain-containing protein. (1256 aa)
	C3XQF5_BRAFL	WD_REPEATS_REGION domain-containing protein. (312 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XSK4_BRAFL	C3XVD1_BRAFL	C3XSK4	C3XVD1	Uncharacterized protein.	Uncharacterized protein.	0.763
C3XSK4_BRAFL	C3Y0Y4_BRAFL	C3XSK4	C3Y0Y4	Uncharacterized protein.	NFRKB_winged domain-containing protein.	0.763
C3XSK4_BRAFL	C3Y6A4_BRAFL	C3XSK4	C3Y6A4	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.433
C3XSK4_BRAFL	C3Y9J6_BRAFL	C3XSK4	C3Y9J6	Uncharacterized protein.	HMG box domain-containing protein.	0.812
C3XSK4_BRAFL	C3YYL6_BRAFL	C3XSK4	C3YYL6	Uncharacterized protein.	FHA domain-containing protein.	0.677
C3XSK4_BRAFL	C3YYL7_BRAFL	C3XSK4	C3YYL7	Uncharacterized protein.	MCRS_N domain-containing protein.	0.750
C3XSK4_BRAFL	C3ZG27_BRAFL	C3XSK4	C3ZG27	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.617
C3XSK4_BRAFL	C3ZMU1_BRAFL	C3XSK4	C3ZMU1	Uncharacterized protein.	Uncharacterized protein.	0.763
C3XVD1_BRAFL	C3XSK4_BRAFL	C3XVD1	C3XSK4	Uncharacterized protein.	Uncharacterized protein.	0.763
C3XVD1_BRAFL	C3Y0Y4_BRAFL	C3XVD1	C3Y0Y4	Uncharacterized protein.	NFRKB_winged domain-containing protein.	0.921
C3XVD1_BRAFL	C3Y6A4_BRAFL	C3XVD1	C3Y6A4	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.944
C3XVD1_BRAFL	C3Y9J6_BRAFL	C3XVD1	C3Y9J6	Uncharacterized protein.	HMG box domain-containing protein.	0.728
C3XVD1_BRAFL	C3YYL6_BRAFL	C3XVD1	C3YYL6	Uncharacterized protein.	FHA domain-containing protein.	0.783
C3XVD1_BRAFL	C3YYL7_BRAFL	C3XVD1	C3YYL7	Uncharacterized protein.	MCRS_N domain-containing protein.	0.847
C3XVD1_BRAFL	C3ZG27_BRAFL	C3XVD1	C3ZG27	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.595
C3XVD1_BRAFL	C3ZMU1_BRAFL	C3XVD1	C3ZMU1	Uncharacterized protein.	Uncharacterized protein.	0.540
C3Y0Y4_BRAFL	C3XSK4_BRAFL	C3Y0Y4	C3XSK4	NFRKB_winged domain-containing protein.	Uncharacterized protein.	0.763
C3Y0Y4_BRAFL	C3XVD1_BRAFL	C3Y0Y4	C3XVD1	NFRKB_winged domain-containing protein.	Uncharacterized protein.	0.921
C3Y0Y4_BRAFL	C3Y6A4_BRAFL	C3Y0Y4	C3Y6A4	NFRKB_winged domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.565
C3Y0Y4_BRAFL	C3Y9J6_BRAFL	C3Y0Y4	C3Y9J6	NFRKB_winged domain-containing protein.	HMG box domain-containing protein.	0.815