(27 nodes) Regulation of centrosome cycle network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZF00_BRAFL	Uncharacterized protein. (790 aa)
	C3XQF6_BRAFL	Uncharacterized protein. (422 aa)
	C3XQF7_BRAFL	Uncharacterized protein. (295 aa)
	C3XQF8_BRAFL	Uncharacterized protein. (257 aa)
	C3XUA0_BRAFL	CEP76-C2 domain-containing protein. (667 aa)
	C3Y073_BRAFL	Importin N-terminal domain-containing protein. (1069 aa)
	C3Y134_BRAFL	BRO1 domain-containing protein. (874 aa)
	C3Y1F0_BRAFL	Uncharacterized protein. (1006 aa)
	C3Y204_BRAFL	Uncharacterized protein. (596 aa)
	C3Y205_BRAFL	Uncharacterized protein. (454 aa)
	C3Y2U8_BRAFL	Uncharacterized protein. (548 aa)
	C3Y5I7_BRAFL	Uncharacterized protein. (720 aa)
	C3Y9V0_BRAFL	Uncharacterized protein. (840 aa)
	C3YIM0_BRAFL	ALMS_motif domain-containing protein. (2857 aa)
	C3YJP8_BRAFL	Uncharacterized protein. (141 aa)
	C3YKX2_BRAFL	Deacetylase sirtuin-type domain-containing protein. (312 aa)
	C3YRQ9_BRAFL	POLO box domain-containing protein. (158 aa)
	C3YT31_BRAFL	Uncharacterized protein. (293 aa)
	C3YXY3_BRAFL	Uncharacterized protein. (377 aa)
	C3Z4Z9_BRAFL	Uncharacterized protein. (226 aa)
	C3Z744_BRAFL	BZIP domain-containing protein. (100 aa)
	C3Z7N7_BRAFL	F-box domain-containing protein; Belongs to the cyclin family. (784 aa)
	C3Z9N2_BRAFL	Uncharacterized protein. (319 aa)
	C3ZC11_BRAFL	Uncharacterized protein. (937 aa)
	C3ZLV7_BRAFL	PPP1R35_C domain-containing protein. (325 aa)
	C3ZZX0_BRAFL	Protein kinase domain-containing protein. (287 aa)
	C4A0Y8_BRAFL	Uncharacterized protein. (907 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQF6_BRAFL	C3XQF7_BRAFL	C3XQF6	C3XQF7	Uncharacterized protein.	Uncharacterized protein.	0.952
C3XQF6_BRAFL	C3XQF8_BRAFL	C3XQF6	C3XQF8	Uncharacterized protein.	Uncharacterized protein.	0.540
C3XQF6_BRAFL	C3YKX2_BRAFL	C3XQF6	C3YKX2	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.461
C3XQF7_BRAFL	C3XQF6_BRAFL	C3XQF7	C3XQF6	Uncharacterized protein.	Uncharacterized protein.	0.952
C3XQF7_BRAFL	C3XQF8_BRAFL	C3XQF7	C3XQF8	Uncharacterized protein.	Uncharacterized protein.	0.548
C3XQF7_BRAFL	C3YKX2_BRAFL	C3XQF7	C3YKX2	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.461
C3XQF8_BRAFL	C3XQF6_BRAFL	C3XQF8	C3XQF6	Uncharacterized protein.	Uncharacterized protein.	0.540
C3XQF8_BRAFL	C3XQF7_BRAFL	C3XQF8	C3XQF7	Uncharacterized protein.	Uncharacterized protein.	0.548
C3XQF8_BRAFL	C3YKX2_BRAFL	C3XQF8	C3YKX2	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.461
C3XUA0_BRAFL	C3YRQ9_BRAFL	C3XUA0	C3YRQ9	CEP76-C2 domain-containing protein.	POLO box domain-containing protein.	0.572
C3XUA0_BRAFL	C3ZZX0_BRAFL	C3XUA0	C3ZZX0	CEP76-C2 domain-containing protein.	Protein kinase domain-containing protein.	0.548
C3XUA0_BRAFL	C4A0Y8_BRAFL	C3XUA0	C4A0Y8	CEP76-C2 domain-containing protein.	Uncharacterized protein.	0.572
C3Y1F0_BRAFL	C3YT31_BRAFL	C3Y1F0	C3YT31	Uncharacterized protein.	Uncharacterized protein.	0.545
C3Y204_BRAFL	C3Y205_BRAFL	C3Y204	C3Y205	Uncharacterized protein.	Uncharacterized protein.	0.942
C3Y204_BRAFL	C3Y9V0_BRAFL	C3Y204	C3Y9V0	Uncharacterized protein.	Uncharacterized protein.	0.503
C3Y205_BRAFL	C3Y204_BRAFL	C3Y205	C3Y204	Uncharacterized protein.	Uncharacterized protein.	0.942
C3Y205_BRAFL	C3Y9V0_BRAFL	C3Y205	C3Y9V0	Uncharacterized protein.	Uncharacterized protein.	0.503
C3Y9V0_BRAFL	C3Y204_BRAFL	C3Y9V0	C3Y204	Uncharacterized protein.	Uncharacterized protein.	0.503
C3Y9V0_BRAFL	C3Y205_BRAFL	C3Y9V0	C3Y205	Uncharacterized protein.	Uncharacterized protein.	0.503
C3YKX2_BRAFL	C3XQF6_BRAFL	C3YKX2	C3XQF6	Deacetylase sirtuin-type domain-containing protein.	Uncharacterized protein.	0.461