(15 nodes) Oocyte development network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XSY1_BRAFL	Tudor domain-containing protein. (957 aa)
	C3Y0E0_BRAFL	RRM domain-containing protein. (436 aa)
	C3Y120_BRAFL	Uncharacterized protein. (82 aa)
	C3Y195_BRAFL	Uncharacterized protein. (3699 aa)
	C3Y1F9_BRAFL	Uncharacterized protein. (1907 aa)
	C3Y6R3_BRAFL	Uncharacterized protein. (1095 aa)
	C3YH71_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (553 aa)
	C3YH73_BRAFL	FAT domain-containing protein. (2357 aa)
	C3YQR0_BRAFL	GATA-type domain-containing protein. (386 aa)
	C3ZC78_BRAFL	WD_REPEATS_REGION domain-containing protein. (222 aa)
	C3ZCL7_BRAFL	Uncharacterized protein. (791 aa)
	C3ZCL9_BRAFL	Uncharacterized protein. (584 aa)
	C3ZVZ7_BRAFL	CCHC-type domain-containing protein. (187 aa)
	C3ZVZ9_BRAFL	Uncharacterized protein. (105 aa)
	C4A079_BRAFL	R3H domain-containing protein. (58 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XSY1_BRAFL	C3Y195_BRAFL	C3XSY1	C3Y195	Tudor domain-containing protein.	Uncharacterized protein.	0.465
C3XSY1_BRAFL	C3Y6R3_BRAFL	C3XSY1	C3Y6R3	Tudor domain-containing protein.	Uncharacterized protein.	0.465
C3Y120_BRAFL	C3Y1F9_BRAFL	C3Y120	C3Y1F9	Uncharacterized protein.	Uncharacterized protein.	0.743
C3Y120_BRAFL	C4A079_BRAFL	C3Y120	C4A079	Uncharacterized protein.	R3H domain-containing protein.	0.743
C3Y195_BRAFL	C3XSY1_BRAFL	C3Y195	C3XSY1	Uncharacterized protein.	Tudor domain-containing protein.	0.465
C3Y1F9_BRAFL	C3Y120_BRAFL	C3Y1F9	C3Y120	Uncharacterized protein.	Uncharacterized protein.	0.743
C3Y6R3_BRAFL	C3XSY1_BRAFL	C3Y6R3	C3XSY1	Uncharacterized protein.	Tudor domain-containing protein.	0.465
C3YH71_BRAFL	C3YH73_BRAFL	C3YH71	C3YH73	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	FAT domain-containing protein.	0.948
C3YH73_BRAFL	C3YH71_BRAFL	C3YH73	C3YH71	FAT domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.948
C4A079_BRAFL	C3Y120_BRAFL	C4A079	C3Y120	R3H domain-containing protein.	Uncharacterized protein.	0.743