(103 nodes) Reproductive structure development network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPP3_BRAFL	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (136 aa)
	C3XQU3_BRAFL	Fe2OG dioxygenase domain-containing protein. (365 aa)
	C3XRN1_BRAFL	Uncharacterized protein. (1244 aa)
	C3XRW5_BRAFL	Protein kinase domain-containing protein. (119 aa)
	C3XRW6_BRAFL	Receptor protein-tyrosine kinase. (609 aa)
	C3XSG6_BRAFL	Uncharacterized protein. (221 aa)
	C3XTK2_BRAFL	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (905 aa)
	C3XTW6_BRAFL	Uncharacterized protein. (181 aa)
	C3XU08_BRAFL	Rab-GAP TBC domain-containing protein. (404 aa)
	C3XUN8_BRAFL	W2 domain-containing protein. (673 aa)
	C3XVC3_BRAFL	Uncharacterized protein. (333 aa)
	C3XVK2_BRAFL	GOLD domain-containing protein. (203 aa)
	C3XVZ8_BRAFL	Uncharacterized protein. (187 aa)
	C3XW38_BRAFL	3Beta_HSD domain-containing protein. (200 aa)
	C3XW52_BRAFL	Uncharacterized protein. (734 aa)
	C3XXN1_BRAFL	HECT domain-containing protein. (1032 aa)
	C3XZD3_BRAFL	Uncharacterized protein. (272 aa)
	C3XZL3_BRAFL	Uncharacterized protein. (4410 aa)
	C3XZL5_BRAFL	UBIQUITIN_CONJUGAT_2 domain-containing protein. (526 aa)
	C3Y062_BRAFL	Uncharacterized protein. (566 aa)
	C3Y145_BRAFL	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (187 aa)
	C3Y162_BRAFL	Uncharacterized protein. (2042 aa)
	C3Y1Z3_BRAFL	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (367 aa)
	C3Y213_BRAFL	BHLH domain-containing protein. (170 aa)
	C3Y214_BRAFL	BHLH domain-containing protein. (210 aa)
	C3Y215_BRAFL	BHLH domain-containing protein. (191 aa)
	C3Y216_BRAFL	BHLH domain-containing protein. (157 aa)
	C3Y243_BRAFL	SCAPER_N domain-containing protein. (1631 aa)
	C3Y276_BRAFL	Uncharacterized protein. (902 aa)
	C3Y4X8_BRAFL	CRAL-TRIO domain-containing protein. (278 aa)
	C3Y5L4_BRAFL	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (585 aa)
	C3Y5N1_BRAFL	Hydroxysteroid dehydrogenase 2. (374 aa)
	C3Y6U5_BRAFL	Uncharacterized protein. (360 aa)
	C3Y937_BRAFL	Uncharacterized protein. (427 aa)
	C3Y947_BRAFL	CRAL-TRIO domain-containing protein. (289 aa)
	C3Y9J6_BRAFL	HMG box domain-containing protein. (334 aa)
	C3Y9T6_BRAFL	TGF_BETA_2 domain-containing protein. (109 aa)
	C3YDQ8_BRAFL	Mothers against decapentaplegic homolog. (559 aa)
	C3YEA6_BRAFL	WW domain-containing protein. (352 aa)
	C3YFD3_BRAFL	eIF2B_5 domain-containing protein. (216 aa)
	C3YFS5_BRAFL	SF1-HH domain-containing protein. (63 aa)
	C3YFS6_BRAFL	KH domain-containing protein. (100 aa)
	C3YH71_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (553 aa)
	C3YH73_BRAFL	FAT domain-containing protein. (2357 aa)
	C3YI56_BRAFL	Uncharacterized protein. (162 aa)
	C3YI58_BRAFL	TPR_REGION domain-containing protein. (720 aa)
	C3YIC9_BRAFL	Uncharacterized protein. (748 aa)
	C3YIR6_BRAFL	Uncharacterized protein. (113 aa)
	C3YJH5_BRAFL	3-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)). (256 aa)
	C3YKJ9_BRAFL	3-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)). (263 aa)
	C3YKX2_BRAFL	Deacetylase sirtuin-type domain-containing protein. (312 aa)
	C3YM24_BRAFL	Uncharacterized protein. (190 aa)
	C3YPI7_BRAFL	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (305 aa)
	C3YPQ7_BRAFL	Uncharacterized protein. (76 aa)
	C3YPQ9_BRAFL	Uncharacterized protein. (142 aa)
	C3YSZ9_BRAFL	FAD-binding PCMH-type domain-containing protein. (517 aa)
	C3YT64_BRAFL	Protein kinase domain-containing protein. (149 aa)
	C3YTF2_BRAFL	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (354 aa)
	C3YTI2_BRAFL	FAD-binding PCMH-type domain-containing protein. (517 aa)
	C3YVG9_BRAFL	Uncharacterized protein. (473 aa)
	C3YVX7_BRAFL	BTB domain-containing protein. (132 aa)
	C3YW20_BRAFL	TGF_BETA_2 domain-containing protein. (308 aa)
	C3YW28_BRAFL	TGF_BETA_2 domain-containing protein. (400 aa)
	C3YW57_BRAFL	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (504 aa)
	C3YWJ6_BRAFL	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (96 aa)
	C3YX32_BRAFL	NR LBD domain-containing protein. (198 aa)
	C3YYC7_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (303 aa)
	C3YZC6_BRAFL	Homeobox domain-containing protein. (68 aa)
	C3YZR0_BRAFL	PHD-type domain-containing protein. (69 aa)
	C3YZR1_BRAFL	Uncharacterized protein. (490 aa)
	C3YZU0_BRAFL	Uncharacterized protein. (127 aa)
	C3Z0T8_BRAFL	WD_REPEATS_REGION domain-containing protein. (1351 aa)
	C3Z1G9_BRAFL	Uncharacterized protein. (131 aa)
	C3Z1V1_BRAFL	DNA_MISMATCH_REPAIR_2 domain-containing protein. (774 aa)
	C3Z792_BRAFL	Uncharacterized protein. (4526 aa)
	C3Z8C5_BRAFL	Uncharacterized protein. (319 aa)
	C3Z8H6_BRAFL	BTB domain-containing protein. (653 aa)
	C3Z937_BRAFL	Uncharacterized protein. (111 aa)
	C3ZBV0_BRAFL	Uncharacterized protein. (1209 aa)
	C3ZC78_BRAFL	WD_REPEATS_REGION domain-containing protein. (222 aa)
	C3ZC95_BRAFL	Uncharacterized protein. (195 aa)
	C3ZDW7_BRAFL	CTCK domain-containing protein. (140 aa)
	C3ZE86_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (290 aa)
	C3ZGL7_BRAFL	Uncharacterized protein. (274 aa)
	C3ZHI9_BRAFL	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (142 aa)
	C3ZHT7_BRAFL	Uncharacterized protein. (307 aa)
	C3ZHY4_BRAFL	Uncharacterized protein. (502 aa)
	Lhx3a\|Lhx3b	LIM class homeodomain transcription factor, Lhx3 subclass. (402 aa)
	C3ZKR6_BRAFL	Uncharacterized protein. (648 aa)
	C3ZKR7_BRAFL	Uncharacterized protein. (270 aa)
	C3ZM27_BRAFL	Uncharacterized protein. (170 aa)
	C3ZMT1_BRAFL	Uncharacterized protein. (2552 aa)
	C3ZNA0_BRAFL	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (447 aa)
	C3ZPI0_BRAFL	SCP2 domain-containing protein. (112 aa)
	C3ZQ72_BRAFL	Uncharacterized protein. (173 aa)
	C3ZTV8_BRAFL	CRAL-TRIO domain-containing protein. (315 aa)
	C3ZTY2_BRAFL	TGF_BETA_2 domain-containing protein. (273 aa)
	C3ZWS9_BRAFL	EGF-like domain-containing protein. (710 aa)
	C3ZYP8_BRAFL	Thioredoxin domain-containing protein. (210 aa)
	C3ZYW1_BRAFL	Thioredoxin domain-containing protein. (252 aa)
	C3ZZC2_BRAFL	Uncharacterized protein. (735 aa)
	C4A0W8_BRAFL	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (504 aa)
	Wnt7b	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (347 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPP3_BRAFL	C3ZC78_BRAFL	C3XPP3	C3ZC78	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	WD_REPEATS_REGION domain-containing protein.	0.522
C3XRW5_BRAFL	C3XRW6_BRAFL	C3XRW5	C3XRW6	Protein kinase domain-containing protein.	Receptor protein-tyrosine kinase.	0.870
C3XRW6_BRAFL	C3XRW5_BRAFL	C3XRW6	C3XRW5	Receptor protein-tyrosine kinase.	Protein kinase domain-containing protein.	0.870
C3XTK2_BRAFL	C3Y937_BRAFL	C3XTK2	C3Y937	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein.	0.917
C3XTK2_BRAFL	C3YH71_BRAFL	C3XTK2	C3YH71	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.576
C3XTK2_BRAFL	C3YH73_BRAFL	C3XTK2	C3YH73	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	FAT domain-containing protein.	0.576
C3XTK2_BRAFL	C3Z1V1_BRAFL	C3XTK2	C3Z1V1	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.752
C3XTW6_BRAFL	C3YM24_BRAFL	C3XTW6	C3YM24	Uncharacterized protein.	Uncharacterized protein.	0.553
C3XTW6_BRAFL	C3ZM27_BRAFL	C3XTW6	C3ZM27	Uncharacterized protein.	Uncharacterized protein.	0.551
C3XUN8_BRAFL	C3XW38_BRAFL	C3XUN8	C3XW38	W2 domain-containing protein.	3Beta_HSD domain-containing protein.	0.458
C3XUN8_BRAFL	C3YFD3_BRAFL	C3XUN8	C3YFD3	W2 domain-containing protein.	eIF2B_5 domain-containing protein.	0.998
C3XUN8_BRAFL	C3YTF2_BRAFL	C3XUN8	C3YTF2	W2 domain-containing protein.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.999
C3XUN8_BRAFL	C3ZNA0_BRAFL	C3XUN8	C3ZNA0	W2 domain-containing protein.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.999
C3XVK2_BRAFL	C3YZU0_BRAFL	C3XVK2	C3YZU0	GOLD domain-containing protein.	Uncharacterized protein.	0.405
C3XW38_BRAFL	C3XUN8_BRAFL	C3XW38	C3XUN8	3Beta_HSD domain-containing protein.	W2 domain-containing protein.	0.458
C3XW38_BRAFL	C3YSZ9_BRAFL	C3XW38	C3YSZ9	3Beta_HSD domain-containing protein.	FAD-binding PCMH-type domain-containing protein.	0.544
C3XW38_BRAFL	C3YTI2_BRAFL	C3XW38	C3YTI2	3Beta_HSD domain-containing protein.	FAD-binding PCMH-type domain-containing protein.	0.544
C3XW52_BRAFL	C3YEA6_BRAFL	C3XW52	C3YEA6	Uncharacterized protein.	WW domain-containing protein.	0.674
C3XW52_BRAFL	C3ZMT1_BRAFL	C3XW52	C3ZMT1	Uncharacterized protein.	Uncharacterized protein.	0.494
C3XZL3_BRAFL	C3XZL5_BRAFL	C3XZL3	C3XZL5	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.964