(34 nodes) Cardiac muscle tissue development network (Branchiostoma floridae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XTY5_BRAFL	Uncharacterized protein. (454 aa)
	C3XV95_BRAFL	Uncharacterized protein. (734 aa)
	C3XWE9_BRAFL	Tafazzin family protein; Belongs to the taffazin family. (261 aa)
	C3XYZ3_BRAFL	MADS-box domain-containing protein. (534 aa)
	C3XZJ1_BRAFL	Uncharacterized protein. (409 aa)
	C3Y145_BRAFL	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (187 aa)
	C3Y1Z3_BRAFL	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (367 aa)
	C3Y212_BRAFL	Deacetylase sirtuin-type domain-containing protein. (414 aa)
	C3Y268_BRAFL	MADS-box domain-containing protein. (450 aa)
	C3Y3F2_BRAFL	Uncharacterized protein. (259 aa)
	C3Y9K9_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (374 aa)
	C3YC70_BRAFL	Uncharacterized protein. (448 aa)
	C3YDQ8_BRAFL	Mothers against decapentaplegic homolog. (559 aa)
	C3YF67_BRAFL	Uncharacterized protein. (126 aa)
	C3YFM2_BRAFL	Uncharacterized protein. (1230 aa)
	C3YPI7_BRAFL	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (305 aa)
	C3YUJ9_BRAFL	Uncharacterized protein. (546 aa)
	C3YUK2_BRAFL	Uncharacterized protein. (214 aa)
	C3YW57_BRAFL	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (504 aa)
	C3YX63_BRAFL	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (354 aa)
	C3YXX5_BRAFL	Uncharacterized protein. (724 aa)
	C3Z3V6_BRAFL	TGF_BETA_2 domain-containing protein. (411 aa)
	C3Z4Y1_BRAFL	Uncharacterized protein. (272 aa)
	C3ZED3_BRAFL	PIP49_C domain-containing protein. (418 aa)
	C3ZGQ5_BRAFL	Uncharacterized protein. (246 aa)
	C3ZH64_BRAFL	LIM zinc-binding domain-containing protein. (8974 aa)
	C3ZHI9_BRAFL	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (142 aa)
	C3ZLL3_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1049 aa)
	C3ZLL7_BRAFL	DUF3385 domain-containing protein. (1400 aa)
	C3ZNT2_BRAFL	Autophagy protein 5; Involved in autophagic vesicle formation. (261 aa)
	C3ZTT7_BRAFL	FAD-binding FR-type domain-containing protein. (516 aa)
	C3ZX21_BRAFL	BHLH domain-containing protein. (71 aa)
	C3ZXR0_BRAFL	RFX-type winged-helix domain-containing protein. (730 aa)
	C4A0W8_BRAFL	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (504 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTY5_BRAFL	C3Y268_BRAFL	C3XTY5	C3Y268	Uncharacterized protein.	MADS-box domain-containing protein.	0.436
C3XYZ3_BRAFL	C3Y268_BRAFL	C3XYZ3	C3Y268	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.591
C3Y1Z3_BRAFL	C3ZX21_BRAFL	C3Y1Z3	C3ZX21	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	BHLH domain-containing protein.	0.478
C3Y268_BRAFL	C3XTY5_BRAFL	C3Y268	C3XTY5	MADS-box domain-containing protein.	Uncharacterized protein.	0.436
C3Y268_BRAFL	C3XYZ3_BRAFL	C3Y268	C3XYZ3	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.591
C3YC70_BRAFL	C3ZLL3_BRAFL	C3YC70	C3ZLL3	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.572
C3YC70_BRAFL	C3ZLL7_BRAFL	C3YC70	C3ZLL7	Uncharacterized protein.	DUF3385 domain-containing protein.	0.572
C3YDQ8_BRAFL	C3Z3V6_BRAFL	C3YDQ8	C3Z3V6	Mothers against decapentaplegic homolog.	TGF_BETA_2 domain-containing protein.	0.787
C3YUJ9_BRAFL	C3ZTT7_BRAFL	C3YUJ9	C3ZTT7	Uncharacterized protein.	FAD-binding FR-type domain-containing protein.	0.545
C3YW57_BRAFL	C4A0W8_BRAFL	C3YW57	C4A0W8	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.543
C3Z3V6_BRAFL	C3YDQ8_BRAFL	C3Z3V6	C3YDQ8	TGF_BETA_2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.787
C3Z4Y1_BRAFL	C3ZLL3_BRAFL	C3Z4Y1	C3ZLL3	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.811
C3Z4Y1_BRAFL	C3ZLL7_BRAFL	C3Z4Y1	C3ZLL7	Uncharacterized protein.	DUF3385 domain-containing protein.	0.811
C3ZLL3_BRAFL	C3YC70_BRAFL	C3ZLL3	C3YC70	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.572
C3ZLL3_BRAFL	C3Z4Y1_BRAFL	C3ZLL3	C3Z4Y1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.811
C3ZLL3_BRAFL	C3ZLL7_BRAFL	C3ZLL3	C3ZLL7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DUF3385 domain-containing protein.	0.974
C3ZLL3_BRAFL	C3ZNT2_BRAFL	C3ZLL3	C3ZNT2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.401
C3ZLL7_BRAFL	C3YC70_BRAFL	C3ZLL7	C3YC70	DUF3385 domain-containing protein.	Uncharacterized protein.	0.572
C3ZLL7_BRAFL	C3Z4Y1_BRAFL	C3ZLL7	C3Z4Y1	DUF3385 domain-containing protein.	Uncharacterized protein.	0.811
C3ZLL7_BRAFL	C3ZLL3_BRAFL	C3ZLL7	C3ZLL3	DUF3385 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.974