(18 nodes) Pigment cell differentiation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XX83_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (304 aa)
	C3YA03_BRAFL	Tyrosinase_Cu-bd domain-containing protein. (548 aa)
	C4A096_BRAFL	Uncharacterized protein. (200 aa)
	C3ZXB4_BRAFL	Uncharacterized protein. (234 aa)
	C3ZT79_BRAFL	Tetraspanin. (251 aa)
	C3ZD27_BRAFL	Na_Ca_ex domain-containing protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (560 aa)
	C3Z6E4_BRAFL	Uncharacterized protein. (1203 aa)
	C3Z5N4_BRAFL	Uncharacterized protein. (491 aa)
	C3Z2B8_BRAFL	Uncharacterized protein. (836 aa)
	C3YML7_BRAFL	Uncharacterized protein. (155 aa)
	C3YIE0_BRAFL	Adaptin_N domain-containing protein. (1179 aa)
	C3YFN5_BRAFL	VPS9 domain-containing protein. (529 aa)
	C3YEZ8_BRAFL	Tetraspanin. (304 aa)
	C3YEZ7_BRAFL	Tetraspanin. (303 aa)
	C3YDN0_BRAFL	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis. (125 aa)
	C3YA02_BRAFL	Tyrosinase_Cu-bd domain-containing protein. (555 aa)
	C3Y8H3_BRAFL	Uncharacterized protein. (180 aa)
	C3Y5V4_BRAFL	Uncharacterized protein. (686 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y5V4_BRAFL	C3Y8H3_BRAFL	C3Y5V4	C3Y8H3	Uncharacterized protein.	Uncharacterized protein.	0.451
C3Y5V4_BRAFL	C3YDN0_BRAFL	C3Y5V4	C3YDN0	Uncharacterized protein.	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	0.650
C3Y5V4_BRAFL	C3YML7_BRAFL	C3Y5V4	C3YML7	Uncharacterized protein.	Uncharacterized protein.	0.558
C3Y5V4_BRAFL	C3Z2B8_BRAFL	C3Y5V4	C3Z2B8	Uncharacterized protein.	Uncharacterized protein.	0.762
C3Y5V4_BRAFL	C3Z6E4_BRAFL	C3Y5V4	C3Z6E4	Uncharacterized protein.	Uncharacterized protein.	0.969
C3Y5V4_BRAFL	C3ZXB4_BRAFL	C3Y5V4	C3ZXB4	Uncharacterized protein.	Uncharacterized protein.	0.576
C3Y5V4_BRAFL	C4A096_BRAFL	C3Y5V4	C4A096	Uncharacterized protein.	Uncharacterized protein.	0.576
C3Y8H3_BRAFL	C3Y5V4_BRAFL	C3Y8H3	C3Y5V4	Uncharacterized protein.	Uncharacterized protein.	0.451
C3Y8H3_BRAFL	C3YA02_BRAFL	C3Y8H3	C3YA02	Uncharacterized protein.	Tyrosinase_Cu-bd domain-containing protein.	0.660
C3Y8H3_BRAFL	C3YFN5_BRAFL	C3Y8H3	C3YFN5	Uncharacterized protein.	VPS9 domain-containing protein.	0.788
C3Y8H3_BRAFL	C3Z6E4_BRAFL	C3Y8H3	C3Z6E4	Uncharacterized protein.	Uncharacterized protein.	0.624
C3YA02_BRAFL	C3Y8H3_BRAFL	C3YA02	C3Y8H3	Tyrosinase_Cu-bd domain-containing protein.	Uncharacterized protein.	0.660
C3YA02_BRAFL	C3YA03_BRAFL	C3YA02	C3YA03	Tyrosinase_Cu-bd domain-containing protein.	Tyrosinase_Cu-bd domain-containing protein.	0.917
C3YA02_BRAFL	C3Z2B8_BRAFL	C3YA02	C3Z2B8	Tyrosinase_Cu-bd domain-containing protein.	Uncharacterized protein.	0.485
C3YA02_BRAFL	C3ZD27_BRAFL	C3YA02	C3ZD27	Tyrosinase_Cu-bd domain-containing protein.	Na_Ca_ex domain-containing protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.598
C3YA03_BRAFL	C3YA02_BRAFL	C3YA03	C3YA02	Tyrosinase_Cu-bd domain-containing protein.	Tyrosinase_Cu-bd domain-containing protein.	0.917
C3YA03_BRAFL	C3ZD27_BRAFL	C3YA03	C3ZD27	Tyrosinase_Cu-bd domain-containing protein.	Na_Ca_ex domain-containing protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.610
C3YDN0_BRAFL	C3Y5V4_BRAFL	C3YDN0	C3Y5V4	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	Uncharacterized protein.	0.650
C3YDN0_BRAFL	C3YML7_BRAFL	C3YDN0	C3YML7	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	Uncharacterized protein.	0.913
C3YDN0_BRAFL	C3Z2B8_BRAFL	C3YDN0	C3Z2B8	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	Uncharacterized protein.	0.793