(114 nodes) Regulation of cell division network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YEA6_BRAFL	WW domain-containing protein. (352 aa)
	C3YEG9_BRAFL	Uncharacterized protein. (425 aa)
	C3YEM3_BRAFL	Uncharacterized protein. (481 aa)
	C3YES4_BRAFL	BTB domain-containing protein. (584 aa)
	C3YES5_BRAFL	BTB domain-containing protein. (567 aa)
	C3YGH8_BRAFL	Uncharacterized protein. (250 aa)
	C3YIJ0_BRAFL	BTB domain-containing protein. (530 aa)
	C3YIN5_BRAFL	Uncharacterized protein. (1044 aa)
	C3YJ43_BRAFL	Uncharacterized protein; Belongs to the heparin-binding growth factors family. (239 aa)
	C3YJI7_BRAFL	Uncharacterized protein. (923 aa)
	C3YKR1_BRAFL	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (666 aa)
	C3YLR7_BRAFL	Uncharacterized protein. (740 aa)
	C3YLS9_BRAFL	Uncharacterized protein. (325 aa)
	C3YN19_BRAFL	BTB domain-containing protein. (576 aa)
	C3YNK7_BRAFL	BTB domain-containing protein. (506 aa)
	C3YQ26_BRAFL	Uncharacterized protein. (150 aa)
	C3YQ27_BRAFL	Uncharacterized protein. (824 aa)
	C3YQ30_BRAFL	Peptidyl-prolyl cis-trans isomerase. (151 aa)
	C3YQF2_BRAFL	Uncharacterized protein. (641 aa)
	C3YR24_BRAFL	Protein kinase domain-containing protein. (330 aa)
	C3YRD8_BRAFL	BTB domain-containing protein. (562 aa)
	C3YRQ9_BRAFL	POLO box domain-containing protein. (158 aa)
	C3YU05_BRAFL	BTB domain-containing protein. (603 aa)
	C3YUR3_BRAFL	INSC_LBD domain-containing protein. (543 aa)
	C3YVP4_BRAFL	Uncharacterized protein. (894 aa)
	C3YWJ9_BRAFL	FIP-RBD domain-containing protein. (344 aa)
	C3YY72_BRAFL	Protein kinase domain-containing protein. (119 aa)
	C3YYS3_BRAFL	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (598 aa)
	C3YYW1_BRAFL	BTB domain-containing protein. (581 aa)
	C3YZM5_BRAFL	Uncharacterized protein. (453 aa)
	C3YZR9_BRAFL	Uncharacterized protein. (376 aa)
	C3YZS2_BRAFL	BACK domain-containing protein. (447 aa)
	C3YZT8_BRAFL	Uncharacterized protein. (744 aa)
	C3Z0T9_BRAFL	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (857 aa)
	C3Z0Y8_BRAFL	BTB domain-containing protein. (577 aa)
	C3Z1G2_BRAFL	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (2394 aa)
	C3Z1G3_BRAFL	Uncharacterized protein. (874 aa)
	C3Z2S3_BRAFL	EGF-like domain-containing protein. (288 aa)
	C3Z3T2_BRAFL	Uncharacterized protein. (172 aa)
	C3Z3T3_BRAFL	Deacetylase sirtuin-type domain-containing protein. (325 aa)
	C3Z6I4_BRAFL	Uncharacterized protein. (107 aa)
	C3Z7E2_BRAFL	UDENN FLCN/SMCR8-type domain-containing protein. (473 aa)
	C3Z7E5_BRAFL	Uncharacterized protein. (1232 aa)
	C3Z809_BRAFL	Uncharacterized protein. (720 aa)
	C3Z937_BRAFL	Uncharacterized protein. (111 aa)
	C3ZA49_BRAFL	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (135 aa)
	C3ZA80_BRAFL	Uncharacterized protein. (1140 aa)
	C3ZBQ7_BRAFL	Uncharacterized protein. (434 aa)
	C3ZBQ9_BRAFL	Helicase ATP-binding domain-containing protein. (270 aa)
	C3ZD49_BRAFL	CABIT domain-containing protein. (637 aa)
	C3ZD51_BRAFL	CABIT domain-containing protein. (386 aa)
	C3ZV93_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (282 aa)
	C3ZTE5_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (321 aa)
	C3ZTD0_BRAFL	Uncharacterized protein. (1227 aa)
	C3ZD52_BRAFL	CABIT domain-containing protein. (614 aa)
	C3ZDV8_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (313 aa)
	C3ZDY2_BRAFL	CULLIN_2 domain-containing protein; Belongs to the cullin family. (753 aa)
	C3ZE24_BRAFL	Uncharacterized protein. (303 aa)
	C3ZFD4_BRAFL	B30.2/SPRY domain-containing protein. (385 aa)
	C3ZFD5_BRAFL	COS domain-containing protein. (193 aa)
	C3ZFY4_BRAFL	CBFD_NFYB_HMF domain-containing protein. (173 aa)
	C3ZHI0_BRAFL	Helicase ATP-binding domain-containing protein. (504 aa)
	C3ZHW5_BRAFL	SGF29 C-terminal domain-containing protein. (339 aa)
	C3ZIB9_BRAFL	Uncharacterized protein. (191 aa)
	C3ZJF0_BRAFL	BTB domain-containing protein. (495 aa)
	C3ZJT7_BRAFL	Serine/threonine-protein kinase PLK. (575 aa)
	C3ZK04_BRAFL	ELYS domain-containing protein. (1093 aa)
	C3ZK08_BRAFL	Uncharacterized protein. (503 aa)
	C3ZLG5_BRAFL	Protein kinase domain-containing protein. (898 aa)
	C3ZLI7_BRAFL	BTB domain-containing protein. (597 aa)
	C3ZM23_BRAFL	BTB domain-containing protein. (596 aa)
	C3ZT85_BRAFL	HP domain-containing protein. (3977 aa)
	C3ZR83_BRAFL	Uncharacterized protein. (459 aa)
	C3ZQ69_BRAFL	Uncharacterized protein. (1679 aa)
	C3ZMQ2_BRAFL	Uncharacterized protein. (716 aa)
	C3ZM24_BRAFL	BTB domain-containing protein. (592 aa)
	C4A017_BRAFL	Uncharacterized protein. (205 aa)
	C4A0Y8_BRAFL	Uncharacterized protein. (907 aa)
	C3ZZD3_BRAFL	Uncharacterized protein. (189 aa)
	C3ZYW7_BRAFL	Uncharacterized protein. (1334 aa)
	C3ZYE3_BRAFL	Uncharacterized protein. (475 aa)
	C3XQF5_BRAFL	WD_REPEATS_REGION domain-containing protein. (312 aa)
	C3XRT2_BRAFL	Uncharacterized protein. (863 aa)
	C3XRW4_BRAFL	Uncharacterized protein. (496 aa)
	C3XT78_BRAFL	Uncharacterized protein. (458 aa)
	C3XU15_BRAFL	Uncharacterized protein. (1053 aa)
	C3XUJ5_BRAFL	ApaG domain-containing protein. (321 aa)
	C3XUK5_BRAFL	GFA domain-containing protein. (119 aa)
	C3XW39_BRAFL	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (163 aa)
	C3XWJ2_BRAFL	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (252 aa)
	C3XWQ3_BRAFL	Uncharacterized protein. (713 aa)
	C3XYM7_BRAFL	Uncharacterized protein. (1314 aa)
	C3XZA3_BRAFL	DUF547 domain-containing protein. (1765 aa)
	C3XZA5_BRAFL	FYVE-type domain-containing protein. (1100 aa)
	C3XZL3_BRAFL	Uncharacterized protein. (4410 aa)
	C3XZL5_BRAFL	UBIQUITIN_CONJUGAT_2 domain-containing protein. (526 aa)
	C3XZQ0_BRAFL	Uncharacterized protein. (613 aa)
	C3Y1V6_BRAFL	Phosphatidylinositol 3-kinase catalytic subunit type 3. (890 aa)
	C3Y235_BRAFL	BHLH domain-containing protein. (369 aa)
	C3Y2A9_BRAFL	BTB domain-containing protein. (196 aa)
	C3Y2E5_BRAFL	E2F_TDP domain-containing protein. (159 aa)
	C3Y3R6_BRAFL	ANK_REP_REGION domain-containing protein. (826 aa)
	C3Y414_BRAFL	SET domain-containing protein. (302 aa)
	C3Y4C7_BRAFL	Uncharacterized protein. (1023 aa)
	C3Y6U5_BRAFL	Uncharacterized protein. (360 aa)
	C3Y7C4_BRAFL	Catalase domain-containing protein. (275 aa)
	C3Y7C5_BRAFL	Catalase domain-containing protein. (452 aa)
	C3Y7L2_BRAFL	INCENP_ARK-bind domain-containing protein. (1201 aa)
	C3Y8N4_BRAFL	Helicase C-terminal domain-containing protein. (591 aa)
	C3Y934_BRAFL	BTB domain-containing protein. (601 aa)
	C3Y9Y4_BRAFL	PDZ domain-containing protein. (324 aa)
	C3YBE9_BRAFL	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1252 aa)
	C3YCQ3_BRAFL	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (961 aa)
	C3YDF0_BRAFL	B30.2/SPRY domain-containing protein. (137 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XU15_BRAFL	C3Y2E5_BRAFL	C3XU15	C3Y2E5	Uncharacterized protein.	E2F_TDP domain-containing protein.	0.617
C3XU15_BRAFL	C3YLS9_BRAFL	C3XU15	C3YLS9	Uncharacterized protein.	Uncharacterized protein.	0.414
C3XU15_BRAFL	C3YYS3_BRAFL	C3XU15	C3YYS3	Uncharacterized protein.	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.	0.463
C3XU15_BRAFL	C3ZDY2_BRAFL	C3XU15	C3ZDY2	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.681
C3XYM7_BRAFL	C3Y1V6_BRAFL	C3XYM7	C3Y1V6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.987
C3XYM7_BRAFL	C3YEM3_BRAFL	C3XYM7	C3YEM3	Uncharacterized protein.	Uncharacterized protein.	0.986
C3XYM7_BRAFL	C3ZE24_BRAFL	C3XYM7	C3ZE24	Uncharacterized protein.	Uncharacterized protein.	0.966
C3XYM7_BRAFL	C3ZYW7_BRAFL	C3XYM7	C3ZYW7	Uncharacterized protein.	Uncharacterized protein.	0.543
C3XZA3_BRAFL	C3XZA5_BRAFL	C3XZA3	C3XZA5	DUF547 domain-containing protein.	FYVE-type domain-containing protein.	0.814
C3XZA5_BRAFL	C3XZA3_BRAFL	C3XZA5	C3XZA3	FYVE-type domain-containing protein.	DUF547 domain-containing protein.	0.814
C3XZL3_BRAFL	C3XZL5_BRAFL	C3XZL3	C3XZL5	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.964
C3XZL3_BRAFL	C3Y7L2_BRAFL	C3XZL3	C3Y7L2	Uncharacterized protein.	INCENP_ARK-bind domain-containing protein.	0.788
C3XZL3_BRAFL	C3YR24_BRAFL	C3XZL3	C3YR24	Uncharacterized protein.	Protein kinase domain-containing protein.	0.417
C3XZL3_BRAFL	C3YRQ9_BRAFL	C3XZL3	C3YRQ9	Uncharacterized protein.	POLO box domain-containing protein.	0.417
C3XZL3_BRAFL	C3ZDV8_BRAFL	C3XZL3	C3ZDV8	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.418
C3XZL3_BRAFL	C3ZDY2_BRAFL	C3XZL3	C3ZDY2	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.547
C3XZL3_BRAFL	C3ZJT7_BRAFL	C3XZL3	C3ZJT7	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.418
C3XZL3_BRAFL	C3ZLG5_BRAFL	C3XZL3	C3ZLG5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.418
C3XZL3_BRAFL	C3ZTE5_BRAFL	C3XZL3	C3ZTE5	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.417
C3XZL3_BRAFL	C3ZV93_BRAFL	C3XZL3	C3ZV93	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.907