(54 nodes) Positive regulation of cytoskeleton organization network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C4A041_BRAFL	WH1 domain-containing protein. (126 aa)
	C3ZMZ2_BRAFL	Uncharacterized protein. (656 aa)
	C3ZMZ0_BRAFL	Uncharacterized protein. (652 aa)
	C3ZLV7_BRAFL	PPP1R35_C domain-containing protein. (325 aa)
	C3ZLL7_BRAFL	DUF3385 domain-containing protein. (1400 aa)
	C3ZLL3_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1049 aa)
	C3ZLE6_BRAFL	Uncharacterized protein. (1136 aa)
	C3ZJ41_BRAFL	Uncharacterized protein. (1669 aa)
	C3ZHV7_BRAFL	FERM domain-containing protein. (547 aa)
	C3ZCU0_BRAFL	Mitogen-activated protein kinase. (515 aa)
	C3ZCG8_BRAFL	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (142 aa)
	C3ZCG7_BRAFL	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (351 aa)
	C3ZAJ1_BRAFL	Uncharacterized protein. (599 aa)
	C3Z7Y7_BRAFL	TPR_REGION domain-containing protein. (318 aa)
	C3Z5E7_BRAFL	PDZ domain-containing protein. (1229 aa)
	C3Z4Z9_BRAFL	Uncharacterized protein. (226 aa)
	C3Z4Z7_BRAFL	Cnn_1N domain-containing protein. (2545 aa)
	C3Z4Y1_BRAFL	Uncharacterized protein. (272 aa)
	C3Z2D6_BRAFL	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	C3YZB4_BRAFL	Uncharacterized protein. (1463 aa)
	C3YZA9_BRAFL	Uncharacterized protein. (1048 aa)
	C3YXY5_BRAFL	PPM-type phosphatase domain-containing protein. (330 aa)
	C3YXX8_BRAFL	BCAS3 domain-containing protein. (825 aa)
	C3YUV2_BRAFL	TPR_REGION domain-containing protein. (151 aa)
	C3YTN4_BRAFL	Uncharacterized protein. (349 aa)
	C3YT31_BRAFL	Uncharacterized protein. (293 aa)
	C3YRQ9_BRAFL	POLO box domain-containing protein. (158 aa)
	C3YL59_BRAFL	Mitogen-activated protein kinase. (321 aa)
	C3YJY7_BRAFL	Uncharacterized protein. (155 aa)
	C3YJP8_BRAFL	Uncharacterized protein. (141 aa)
	C3YJ65_BRAFL	Dynactin domain-containing protein. (1139 aa)
	C3YJ64_BRAFL	CAP-Gly domain-containing protein. (113 aa)
	C3YJ60_BRAFL	WD_REPEATS_REGION domain-containing protein. (534 aa)
	C3YCZ9_BRAFL	CARMIL_C domain-containing protein. (1859 aa)
	C3YBI8_BRAFL	Calponin-homology (CH) domain-containing protein. (581 aa)
	C3YA20_BRAFL	Protein kinase domain-containing protein. (689 aa)
	C3Y9J5_BRAFL	Uncharacterized protein. (674 aa)
	C3Y7Q2_BRAFL	TPR_REGION domain-containing protein. (280 aa)
	C3Y719_BRAFL	Uncharacterized protein. (391 aa)
	C3Y528_BRAFL	Uncharacterized protein. (1907 aa)
	C3Y3U7_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (376 aa)
	C3Y3R6_BRAFL	ANK_REP_REGION domain-containing protein. (826 aa)
	C3Y205_BRAFL	Uncharacterized protein. (454 aa)
	C3Y204_BRAFL	Uncharacterized protein. (596 aa)
	C3Y189_BRAFL	Id-1. (143 aa)
	C3Y0W8_BRAFL	Uncharacterized protein. (150 aa)
	C3XWH9_BRAFL	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (226 aa)
	C3XRY6_BRAFL	Katanin_con80 domain-containing protein. (344 aa)
	C3ZNB9_BRAFL	Stathmin; Belongs to the stathmin family. (175 aa)
	C3ZXS7_BRAFL	TPR_REGION domain-containing protein. (273 aa)
	C3ZXU0_BRAFL	Uncharacterized protein. (384 aa)
	C3ZZD3_BRAFL	Uncharacterized protein. (189 aa)
	C4A017_BRAFL	Uncharacterized protein. (205 aa)
	C4A0Y8_BRAFL	Uncharacterized protein. (907 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y204_BRAFL	C3Y205_BRAFL	C3Y204	C3Y205	Uncharacterized protein.	Uncharacterized protein.	0.942
C3Y205_BRAFL	C3Y204_BRAFL	C3Y205	C3Y204	Uncharacterized protein.	Uncharacterized protein.	0.942
C3Y528_BRAFL	C3YRQ9_BRAFL	C3Y528	C3YRQ9	Uncharacterized protein.	POLO box domain-containing protein.	0.527
C3Y528_BRAFL	C3Z4Z7_BRAFL	C3Y528	C3Z4Z7	Uncharacterized protein.	Cnn_1N domain-containing protein.	0.526
C3Y528_BRAFL	C4A0Y8_BRAFL	C3Y528	C4A0Y8	Uncharacterized protein.	Uncharacterized protein.	0.527
C3Y719_BRAFL	C3Z7Y7_BRAFL	C3Y719	C3Z7Y7	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.900
C3Y9J5_BRAFL	C3YZB4_BRAFL	C3Y9J5	C3YZB4	Uncharacterized protein.	Uncharacterized protein.	0.734
C3Y9J5_BRAFL	C3ZLE6_BRAFL	C3Y9J5	C3ZLE6	Uncharacterized protein.	Uncharacterized protein.	0.761
C3Y9J5_BRAFL	C3ZXU0_BRAFL	C3Y9J5	C3ZXU0	Uncharacterized protein.	Uncharacterized protein.	0.822
C3Y9J5_BRAFL	C4A041_BRAFL	C3Y9J5	C4A041	Uncharacterized protein.	WH1 domain-containing protein.	0.491
C3YJ64_BRAFL	C3Z4Y1_BRAFL	C3YJ64	C3Z4Y1	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.456
C3YJ65_BRAFL	C3Z4Y1_BRAFL	C3YJ65	C3Z4Y1	Dynactin domain-containing protein.	Uncharacterized protein.	0.456
C3YRQ9_BRAFL	C3Y528_BRAFL	C3YRQ9	C3Y528	POLO box domain-containing protein.	Uncharacterized protein.	0.527
C3YRQ9_BRAFL	C3YT31_BRAFL	C3YRQ9	C3YT31	POLO box domain-containing protein.	Uncharacterized protein.	0.933
C3YT31_BRAFL	C3YRQ9_BRAFL	C3YT31	C3YRQ9	Uncharacterized protein.	POLO box domain-containing protein.	0.933
C3YT31_BRAFL	C3ZLV7_BRAFL	C3YT31	C3ZLV7	Uncharacterized protein.	PPP1R35_C domain-containing protein.	0.520
C3YT31_BRAFL	C4A0Y8_BRAFL	C3YT31	C4A0Y8	Uncharacterized protein.	Uncharacterized protein.	0.933
C3YZA9_BRAFL	C3ZXU0_BRAFL	C3YZA9	C3ZXU0	Uncharacterized protein.	Uncharacterized protein.	0.793
C3YZB4_BRAFL	C3Y9J5_BRAFL	C3YZB4	C3Y9J5	Uncharacterized protein.	Uncharacterized protein.	0.734
C3YZB4_BRAFL	C3ZLE6_BRAFL	C3YZB4	C3ZLE6	Uncharacterized protein.	Uncharacterized protein.	0.818