(31 nodes) Histone H3-K4 methylation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XUB0_BRAFL	Uncharacterized protein. (328 aa)
	C3XTR8_BRAFL	SET domain-containing protein. (327 aa)
	C3XR87_BRAFL	PHD-type domain-containing protein. (154 aa)
	C3ZV23_BRAFL	Uncharacterized protein. (224 aa)
	C3XR86_BRAFL	Uncharacterized protein. (313 aa)
	C3ZKP7_BRAFL	Uncharacterized protein. (612 aa)
	C3XZ39_BRAFL	Uncharacterized protein. (101 aa)
	C3XZZ6_BRAFL	Uncharacterized protein. (175 aa)
	C3Y276_BRAFL	Uncharacterized protein. (902 aa)
	C3XXM6_BRAFL	TPR_REGION domain-containing protein. (1022 aa)
	C3Y529_BRAFL	TPR_REGION domain-containing protein. (1183 aa)
	C3Y605_BRAFL	Uncharacterized protein. (331 aa)
	C3Y683_BRAFL	GRIP domain-containing protein. (699 aa)
	C3YEQ4_BRAFL	Uncharacterized protein. (453 aa)
	C3YL80_BRAFL	B30.2/SPRY domain-containing protein. (592 aa)
	C3YV86_BRAFL	Uncharacterized protein. (269 aa)
	C3YV92_BRAFL	WD_REPEATS_REGION domain-containing protein. (276 aa)
	C3ZL20_BRAFL	Uncharacterized protein. (2482 aa)
	C3ZQG2_BRAFL	Plus3 domain-containing protein. (605 aa)
	C3YZ52_BRAFL	Uncharacterized protein. (448 aa)
	C3Z2G5_BRAFL	WD_REPEATS_REGION domain-containing protein. (495 aa)
	C3Z4E3_BRAFL	WD_REPEATS_REGION domain-containing protein. (274 aa)
	C3Z889_BRAFL	Nucleic_acid_bd domain-containing protein. (72 aa)
	C3ZAD7_BRAFL	Uncharacterized protein. (789 aa)
	C3ZH30_BRAFL	Uncharacterized protein. (1891 aa)
	C3ZI18_BRAFL	CBFD_NFYB_HMF domain-containing protein. (415 aa)
	C3XY87_BRAFL	SET domain-containing protein. (604 aa)
	C3XW52_BRAFL	Uncharacterized protein. (734 aa)
	C3XUF5_BRAFL	SET domain-containing protein. (287 aa)
	Q8T776_BRAFL	WD_REPEATS_REGION domain-containing protein. (353 aa)
	C3ZV25_BRAFL	Uncharacterized protein. (223 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XR86_BRAFL	C3XR87_BRAFL	C3XR86	C3XR87	Uncharacterized protein.	PHD-type domain-containing protein.	0.900
C3XR86_BRAFL	C3XW52_BRAFL	C3XR86	C3XW52	Uncharacterized protein.	Uncharacterized protein.	0.455
C3XR86_BRAFL	C3XZ39_BRAFL	C3XR86	C3XZ39	Uncharacterized protein.	Uncharacterized protein.	0.570
C3XR86_BRAFL	C3Y276_BRAFL	C3XR86	C3Y276	Uncharacterized protein.	Uncharacterized protein.	0.455
C3XR86_BRAFL	C3YL80_BRAFL	C3XR86	C3YL80	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.944
C3XR86_BRAFL	C3Z2G5_BRAFL	C3XR86	C3Z2G5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.946
C3XR86_BRAFL	C3ZH30_BRAFL	C3XR86	C3ZH30	Uncharacterized protein.	Uncharacterized protein.	0.627
C3XR86_BRAFL	C3ZKP7_BRAFL	C3XR86	C3ZKP7	Uncharacterized protein.	Uncharacterized protein.	0.842
C3XR86_BRAFL	C3ZL20_BRAFL	C3XR86	C3ZL20	Uncharacterized protein.	Uncharacterized protein.	0.640
C3XR86_BRAFL	Q8T776_BRAFL	C3XR86	Q8T776	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.758
C3XR87_BRAFL	C3XR86_BRAFL	C3XR87	C3XR86	PHD-type domain-containing protein.	Uncharacterized protein.	0.900
C3XR87_BRAFL	C3XW52_BRAFL	C3XR87	C3XW52	PHD-type domain-containing protein.	Uncharacterized protein.	0.455
C3XR87_BRAFL	C3XZ39_BRAFL	C3XR87	C3XZ39	PHD-type domain-containing protein.	Uncharacterized protein.	0.570
C3XR87_BRAFL	C3Y276_BRAFL	C3XR87	C3Y276	PHD-type domain-containing protein.	Uncharacterized protein.	0.455
C3XR87_BRAFL	C3YL80_BRAFL	C3XR87	C3YL80	PHD-type domain-containing protein.	B30.2/SPRY domain-containing protein.	0.944
C3XR87_BRAFL	C3Z2G5_BRAFL	C3XR87	C3Z2G5	PHD-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.946
C3XR87_BRAFL	C3ZH30_BRAFL	C3XR87	C3ZH30	PHD-type domain-containing protein.	Uncharacterized protein.	0.627
C3XR87_BRAFL	C3ZKP7_BRAFL	C3XR87	C3ZKP7	PHD-type domain-containing protein.	Uncharacterized protein.	0.842
C3XR87_BRAFL	C3ZL20_BRAFL	C3XR87	C3ZL20	PHD-type domain-containing protein.	Uncharacterized protein.	0.640
C3XR87_BRAFL	Q8T776_BRAFL	C3XR87	Q8T776	PHD-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.758