(35 nodes) Muscle cell development network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YE95_BRAFL	Uncharacterized protein. (188 aa)
	C3Y9K9_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (374 aa)
	C3Y9D4_BRAFL	Uncharacterized protein. (550 aa)
	C3Y1R0_BRAFL	Spatacsin_C domain-containing protein. (1876 aa)
	C3Y3S6_BRAFL	Uncharacterized protein. (1792 aa)
	C3Y7I0_BRAFL	Uncharacterized protein. (651 aa)
	C3XYX8_BRAFL	Uncharacterized protein. (1404 aa)
	C3XYZ3_BRAFL	MADS-box domain-containing protein. (534 aa)
	C3Y7Z4_BRAFL	Uncharacterized protein. (1345 aa)
	C3XZ42_BRAFL	Uncharacterized protein. (893 aa)
	C3XZR5_BRAFL	Uncharacterized protein. (1934 aa)
	C3ZYS3_BRAFL	Uncharacterized protein. (652 aa)
	C3ZTW1_BRAFL	Smoothend-like protein protein; Belongs to the G-protein coupled receptor Fz/Smo family. (1250 aa)
	C3ZNT2_BRAFL	Autophagy protein 5; Involved in autophagic vesicle formation. (261 aa)
	C3ZN09_BRAFL	Uncharacterized protein. (449 aa)
	C3ZMJ8_BRAFL	Uncharacterized protein. (179 aa)
	C3ZLL7_BRAFL	DUF3385 domain-containing protein. (1400 aa)
	C3ZLL3_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1049 aa)
	C3ZLH8_BRAFL	Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. (804 aa)
	C3ZKV3_BRAFL	R3H domain-containing protein. (979 aa)
	C3ZK45_BRAFL	Uncharacterized protein. (208 aa)
	C3ZH64_BRAFL	LIM zinc-binding domain-containing protein. (8974 aa)
	C3ZGQ5_BRAFL	Uncharacterized protein. (246 aa)
	C3ZF76_BRAFL	Uncharacterized protein. (903 aa)
	C3ZDF9_BRAFL	Uncharacterized protein. (426 aa)
	C3Z9H1_BRAFL	Uncharacterized protein. (463 aa)
	C3Z588_BRAFL	Uncharacterized protein. (1024 aa)
	C3Z0E4_BRAFL	Uncharacterized protein. (2185 aa)
	C3Z0C7_BRAFL	Ig-like domain-containing protein. (101 aa)
	C3YX63_BRAFL	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (354 aa)
	C3YJ60_BRAFL	WD_REPEATS_REGION domain-containing protein. (534 aa)
	C3YIY0_BRAFL	BAR domain-containing protein. (255 aa)
	C3YH21_BRAFL	Uncharacterized protein. (104 aa)
	C3YH20_BRAFL	EF-hand domain-containing protein. (436 aa)
	C3YF92_BRAFL	Uncharacterized protein. (1253 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XZ42_BRAFL	C3Y7I0_BRAFL	C3XZ42	C3Y7I0	Uncharacterized protein.	Uncharacterized protein.	0.818
C3XZ42_BRAFL	C3YJ60_BRAFL	C3XZ42	C3YJ60	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.446
C3XZ42_BRAFL	C3ZH64_BRAFL	C3XZ42	C3ZH64	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.521
C3XZ42_BRAFL	C3ZK45_BRAFL	C3XZ42	C3ZK45	Uncharacterized protein.	Uncharacterized protein.	0.426
C3XZ42_BRAFL	C3ZMJ8_BRAFL	C3XZ42	C3ZMJ8	Uncharacterized protein.	Uncharacterized protein.	0.818
C3Y7I0_BRAFL	C3XZ42_BRAFL	C3Y7I0	C3XZ42	Uncharacterized protein.	Uncharacterized protein.	0.818
C3Y7I0_BRAFL	C3ZH64_BRAFL	C3Y7I0	C3ZH64	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.571
C3YJ60_BRAFL	C3XZ42_BRAFL	C3YJ60	C3XZ42	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.446
C3YX63_BRAFL	C3ZLH8_BRAFL	C3YX63	C3ZLH8	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.	Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3.	0.530
C3ZH64_BRAFL	C3XZ42_BRAFL	C3ZH64	C3XZ42	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.521
C3ZH64_BRAFL	C3Y7I0_BRAFL	C3ZH64	C3Y7I0	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.571
C3ZH64_BRAFL	C3ZMJ8_BRAFL	C3ZH64	C3ZMJ8	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.571
C3ZK45_BRAFL	C3XZ42_BRAFL	C3ZK45	C3XZ42	Uncharacterized protein.	Uncharacterized protein.	0.426
C3ZLH8_BRAFL	C3YX63_BRAFL	C3ZLH8	C3YX63	Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3.	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.	0.530
C3ZLL3_BRAFL	C3ZLL7_BRAFL	C3ZLL3	C3ZLL7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DUF3385 domain-containing protein.	0.974
C3ZLL3_BRAFL	C3ZNT2_BRAFL	C3ZLL3	C3ZNT2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.401
C3ZLL7_BRAFL	C3ZLL3_BRAFL	C3ZLL7	C3ZLL3	DUF3385 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.974
C3ZLL7_BRAFL	C3ZNT2_BRAFL	C3ZLL7	C3ZNT2	DUF3385 domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.401
C3ZMJ8_BRAFL	C3XZ42_BRAFL	C3ZMJ8	C3XZ42	Uncharacterized protein.	Uncharacterized protein.	0.818
C3ZMJ8_BRAFL	C3ZH64_BRAFL	C3ZMJ8	C3ZH64	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.571