(14 nodes) Cardiac muscle cell differentiation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XYZ3_BRAFL	MADS-box domain-containing protein. (534 aa)
	C3Y212_BRAFL	Deacetylase sirtuin-type domain-containing protein. (414 aa)
	C3Y268_BRAFL	MADS-box domain-containing protein. (450 aa)
	C3Y9K9_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (374 aa)
	C3YUJ9_BRAFL	Uncharacterized protein. (546 aa)
	C3YUK2_BRAFL	Uncharacterized protein. (214 aa)
	C3YX63_BRAFL	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (354 aa)
	C3Z3V6_BRAFL	TGF_BETA_2 domain-containing protein. (411 aa)
	C3Z4Y1_BRAFL	Uncharacterized protein. (272 aa)
	C3ZH64_BRAFL	LIM zinc-binding domain-containing protein. (8974 aa)
	C3ZLL3_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1049 aa)
	C3ZLL7_BRAFL	DUF3385 domain-containing protein. (1400 aa)
	C3ZNT2_BRAFL	Autophagy protein 5; Involved in autophagic vesicle formation. (261 aa)
	C3ZTT7_BRAFL	FAD-binding FR-type domain-containing protein. (516 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XYZ3_BRAFL	C3Y268_BRAFL	C3XYZ3	C3Y268	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.591
C3Y268_BRAFL	C3XYZ3_BRAFL	C3Y268	C3XYZ3	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.591
C3YUJ9_BRAFL	C3ZTT7_BRAFL	C3YUJ9	C3ZTT7	Uncharacterized protein.	FAD-binding FR-type domain-containing protein.	0.545
C3Z4Y1_BRAFL	C3ZLL3_BRAFL	C3Z4Y1	C3ZLL3	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.811
C3Z4Y1_BRAFL	C3ZLL7_BRAFL	C3Z4Y1	C3ZLL7	Uncharacterized protein.	DUF3385 domain-containing protein.	0.811
C3ZLL3_BRAFL	C3Z4Y1_BRAFL	C3ZLL3	C3Z4Y1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.811
C3ZLL3_BRAFL	C3ZLL7_BRAFL	C3ZLL3	C3ZLL7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DUF3385 domain-containing protein.	0.974
C3ZLL3_BRAFL	C3ZNT2_BRAFL	C3ZLL3	C3ZNT2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.401
C3ZLL7_BRAFL	C3Z4Y1_BRAFL	C3ZLL7	C3Z4Y1	DUF3385 domain-containing protein.	Uncharacterized protein.	0.811
C3ZLL7_BRAFL	C3ZLL3_BRAFL	C3ZLL7	C3ZLL3	DUF3385 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.974
C3ZLL7_BRAFL	C3ZNT2_BRAFL	C3ZLL7	C3ZNT2	DUF3385 domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.401
C3ZNT2_BRAFL	C3ZLL3_BRAFL	C3ZNT2	C3ZLL3	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.401
C3ZNT2_BRAFL	C3ZLL7_BRAFL	C3ZNT2	C3ZLL7	Autophagy protein 5; Involved in autophagic vesicle formation.	DUF3385 domain-containing protein.	0.401
C3ZTT7_BRAFL	C3YUJ9_BRAFL	C3ZTT7	C3YUJ9	FAD-binding FR-type domain-containing protein.	Uncharacterized protein.	0.545