(14 nodes) Long-term synaptic potentiation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Z5Q7_BRAFL	Uncharacterized protein. (87 aa)
	C3Z6X4_BRAFL	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (415 aa)
	C3ZB25_BRAFL	Uncharacterized protein. (129 aa)
	C3ZGI7_BRAFL	Death domain-containing protein. (463 aa)
	C3ZR15_BRAFL	LRRCT domain-containing protein. (1003 aa)
	C3ZW32_BRAFL	Uncharacterized protein. (140 aa)
	C3ZS60_BRAFL	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (399 aa)
	C3XS03_BRAFL	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (210 aa)
	C3XS11_BRAFL	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (194 aa)
	C3Y747_BRAFL	Uncharacterized protein. (940 aa)
	C3Y993_BRAFL	Uncharacterized protein. (1020 aa)
	C3YFZ3_BRAFL	Uncharacterized protein. (272 aa)
	C3YGU5_BRAFL	LRRCT domain-containing protein. (878 aa)
	C3Z2M5_BRAFL	Uncharacterized protein. (2060 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XS03_BRAFL	C3XS11_BRAFL	C3XS03	C3XS11	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.550
C3XS03_BRAFL	C3ZGI7_BRAFL	C3XS03	C3ZGI7	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Death domain-containing protein.	0.615
C3XS11_BRAFL	C3XS03_BRAFL	C3XS11	C3XS03	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.550
C3XS11_BRAFL	C3ZGI7_BRAFL	C3XS11	C3ZGI7	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Death domain-containing protein.	0.615
C3ZGI7_BRAFL	C3XS03_BRAFL	C3ZGI7	C3XS03	Death domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.615
C3ZGI7_BRAFL	C3XS11_BRAFL	C3ZGI7	C3XS11	Death domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.615