(13 nodes) Regulation of ER to Golgi vesicle-mediated transport network (Branchiostoma floridae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XRU7_BRAFL	Uncharacterized protein. (2383 aa)
	C3XU08_BRAFL	Rab-GAP TBC domain-containing protein. (404 aa)
	C3Y6H5_BRAFL	RING-type domain-containing protein. (449 aa)
	C3YJD7_BRAFL	Uncharacterized protein. (719 aa)
	C3ZXF0_BRAFL	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (642 aa)
	C3ZCW7_BRAFL	WD_REPEATS_REGION domain-containing protein. (393 aa)
	C3YP46_BRAFL	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (183 aa)
	C3YP47_BRAFL	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (552 aa)
	C3YP64_BRAFL	Uncharacterized protein. (108 aa)
	C3YRU1_BRAFL	Uncharacterized protein. (901 aa)
	C3ZAH8_BRAFL	Uncharacterized protein. (2208 aa)
	C3ZAI0_BRAFL	Uncharacterized protein. (206 aa)
	C3ZAI1_BRAFL	Uncharacterized protein. (181 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3YJD7_BRAFL	C3ZXF0_BRAFL	C3YJD7	C3ZXF0	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.695
C3YP46_BRAFL	C3YP47_BRAFL	C3YP46	C3YP47	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.551
C3YP46_BRAFL	C3YP64_BRAFL	C3YP46	C3YP64	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Uncharacterized protein.	0.548
C3YP46_BRAFL	C3ZCW7_BRAFL	C3YP46	C3ZCW7	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	WD_REPEATS_REGION domain-containing protein.	0.866
C3YP47_BRAFL	C3YP46_BRAFL	C3YP47	C3YP46	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.551
C3YP47_BRAFL	C3YP64_BRAFL	C3YP47	C3YP64	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Uncharacterized protein.	0.571
C3YP47_BRAFL	C3ZCW7_BRAFL	C3YP47	C3ZCW7	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	WD_REPEATS_REGION domain-containing protein.	0.866
C3YP64_BRAFL	C3YP46_BRAFL	C3YP64	C3YP46	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.548
C3YP64_BRAFL	C3YP47_BRAFL	C3YP64	C3YP47	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.571
C3YP64_BRAFL	C3ZCW7_BRAFL	C3YP64	C3ZCW7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.858
C3ZCW7_BRAFL	C3YP46_BRAFL	C3ZCW7	C3YP46	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.866
C3ZCW7_BRAFL	C3YP47_BRAFL	C3ZCW7	C3YP47	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.866
C3ZCW7_BRAFL	C3YP64_BRAFL	C3ZCW7	C3YP64	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.858
C3ZXF0_BRAFL	C3YJD7_BRAFL	C3ZXF0	C3YJD7	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein.	0.695