(48 nodes) RNA polymerase binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C4A107_BRAFL	Uncharacterized protein. (519 aa)
	C4A0Y7_BRAFL	Uncharacterized protein. (416 aa)
	C4A079_BRAFL	R3H domain-containing protein. (58 aa)
	C3ZZX7_BRAFL	Uncharacterized protein. (507 aa)
	C3ZZX1_BRAFL	CID domain-containing protein. (72 aa)
	C3ZQG2_BRAFL	Plus3 domain-containing protein. (605 aa)
	C3ZM90_BRAFL	Uncharacterized protein. (263 aa)
	C3ZG24_BRAFL	Uncharacterized protein. (536 aa)
	C3ZG02_BRAFL	PHB domain-containing protein. (280 aa)
	C3ZEM7_BRAFL	TFIIS N-terminal domain-containing protein. (295 aa)
	C3ZCP1_BRAFL	TFIIB-type domain-containing protein. (319 aa)
	C3ZBU2_BRAFL	Uncharacterized protein. (458 aa)
	C3ZB99_BRAFL	CID domain-containing protein. (323 aa)
	C3ZAS4_BRAFL	WW domain-containing protein. (781 aa)
	C3Z9H1_BRAFL	Uncharacterized protein. (463 aa)
	C3Z8Y4_BRAFL	Uncharacterized protein. (736 aa)
	C3Z7G5_BRAFL	Uncharacterized protein. (548 aa)
	C3Z6V5_BRAFL	Uncharacterized protein. (1415 aa)
	C3Z123_BRAFL	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (208 aa)
	Kif4A.2	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (158 aa)
	C3YZS6_BRAFL	Uncharacterized protein. (425 aa)
	C3YZS4_BRAFL	Uncharacterized protein. (122 aa)
	C3YW39_BRAFL	Uncharacterized protein. (2614 aa)
	C3YV24_BRAFL	Uncharacterized protein. (188 aa)
	C3YV22_BRAFL	PCIF1_WW domain-containing protein. (730 aa)
	C3YTQ8_BRAFL	RTR1-type domain-containing protein. (653 aa)
	C3YQX8_BRAFL	CID domain-containing protein. (313 aa)
	C3YPY7_BRAFL	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (222 aa)
	C3YPY6_BRAFL	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (220 aa)
	C3YLT3_BRAFL	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (82 aa)
	C3YGP3_BRAFL	WD_REPEATS_REGION domain-containing protein. (657 aa)
	C3YFR5_BRAFL	Uncharacterized protein. (245 aa)
	C3YA64_BRAFL	Uncharacterized protein. (352 aa)
	C3Y7V3_BRAFL	Uncharacterized protein. (539 aa)
	C3Y7R7_BRAFL	XPGI domain-containing protein. (162 aa)
	C3Y6M9_BRAFL	PHB domain-containing protein. (265 aa)
	C3Y6B1_BRAFL	Uncharacterized protein. (1727 aa)
	C3Y606_BRAFL	RING-type domain-containing protein. (629 aa)
	C3Y529_BRAFL	TPR_REGION domain-containing protein. (1183 aa)
	C3Y505_BRAFL	Uncharacterized protein. (572 aa)
	C3Y4A7_BRAFL	Uncharacterized protein. (389 aa)
	C3Y4A6_BRAFL	Uncharacterized protein. (561 aa)
	C3Y332_BRAFL	Uncharacterized protein. (1237 aa)
	C3Y1F9_BRAFL	Uncharacterized protein. (1907 aa)
	C3Y0L7_BRAFL	Uncharacterized protein. (249 aa)
	C3XUR6_BRAFL	Uncharacterized protein. (194 aa)
	C3XSK0_BRAFL	CYCLIN domain-containing protein; Belongs to the cyclin family. (257 aa)
	C3XPP3_BRAFL	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (136 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPP3_BRAFL	C3ZCP1_BRAFL	C3XPP3	C3ZCP1	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	TFIIB-type domain-containing protein.	0.973
C3XSK0_BRAFL	C3Y529_BRAFL	C3XSK0	C3Y529	CYCLIN domain-containing protein; Belongs to the cyclin family.	TPR_REGION domain-containing protein.	0.639
C3XSK0_BRAFL	C3YA64_BRAFL	C3XSK0	C3YA64	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.614
C3XSK0_BRAFL	C3YLT3_BRAFL	C3XSK0	C3YLT3	CYCLIN domain-containing protein; Belongs to the cyclin family.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.545
C3XSK0_BRAFL	C3ZCP1_BRAFL	C3XSK0	C3ZCP1	CYCLIN domain-containing protein; Belongs to the cyclin family.	TFIIB-type domain-containing protein.	0.758
C3XSK0_BRAFL	C3ZG24_BRAFL	C3XSK0	C3ZG24	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.687
C3XSK0_BRAFL	C3ZQG2_BRAFL	C3XSK0	C3ZQG2	CYCLIN domain-containing protein; Belongs to the cyclin family.	Plus3 domain-containing protein.	0.665
C3XSK0_BRAFL	C3ZZX1_BRAFL	C3XSK0	C3ZZX1	CYCLIN domain-containing protein; Belongs to the cyclin family.	CID domain-containing protein.	0.592
C3XSK0_BRAFL	C4A0Y7_BRAFL	C3XSK0	C4A0Y7	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.592
C3XSK0_BRAFL	C4A107_BRAFL	C3XSK0	C4A107	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.427
C3Y1F9_BRAFL	C3Y332_BRAFL	C3Y1F9	C3Y332	Uncharacterized protein.	Uncharacterized protein.	0.720
C3Y1F9_BRAFL	C3YGP3_BRAFL	C3Y1F9	C3YGP3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.525
C3Y1F9_BRAFL	C3ZZX1_BRAFL	C3Y1F9	C3ZZX1	Uncharacterized protein.	CID domain-containing protein.	0.549
C3Y1F9_BRAFL	C4A0Y7_BRAFL	C3Y1F9	C4A0Y7	Uncharacterized protein.	Uncharacterized protein.	0.549
C3Y1F9_BRAFL	C4A107_BRAFL	C3Y1F9	C4A107	Uncharacterized protein.	Uncharacterized protein.	0.549
C3Y332_BRAFL	C3Y1F9_BRAFL	C3Y332	C3Y1F9	Uncharacterized protein.	Uncharacterized protein.	0.720
C3Y332_BRAFL	C3Y4A6_BRAFL	C3Y332	C3Y4A6	Uncharacterized protein.	Uncharacterized protein.	0.589
C3Y332_BRAFL	C3Y4A7_BRAFL	C3Y332	C3Y4A7	Uncharacterized protein.	Uncharacterized protein.	0.589
C3Y332_BRAFL	C3YGP3_BRAFL	C3Y332	C3YGP3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.511
C3Y332_BRAFL	C3YW39_BRAFL	C3Y332	C3YW39	Uncharacterized protein.	Uncharacterized protein.	0.624