(9 nodes) UV-damage excision repair network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YKX2_BRAFL	Deacetylase sirtuin-type domain-containing protein. (312 aa)
	C3YAV9_BRAFL	Uncharacterized protein. (377 aa)
	C3XVD1_BRAFL	Uncharacterized protein. (3715 aa)
	C3Y937_BRAFL	Uncharacterized protein. (427 aa)
	C3ZMU1_BRAFL	Uncharacterized protein. (1878 aa)
	C3ZMJ6_BRAFL	CPSF_A domain-containing protein. (1152 aa)
	C3ZD95_BRAFL	Uncharacterized protein. (499 aa)
	C3YTV5_BRAFL	Uncharacterized protein; Belongs to the actin family. (655 aa)
	C3YQX9_BRAFL	XPA_C domain-containing protein. (259 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XVD1_BRAFL	C3YAV9_BRAFL	C3XVD1	C3YAV9	Uncharacterized protein.	Uncharacterized protein.	0.444
C3XVD1_BRAFL	C3YTV5_BRAFL	C3XVD1	C3YTV5	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.976
C3XVD1_BRAFL	C3ZMJ6_BRAFL	C3XVD1	C3ZMJ6	Uncharacterized protein.	CPSF_A domain-containing protein.	0.436
C3XVD1_BRAFL	C3ZMU1_BRAFL	C3XVD1	C3ZMU1	Uncharacterized protein.	Uncharacterized protein.	0.540
C3Y937_BRAFL	C3YAV9_BRAFL	C3Y937	C3YAV9	Uncharacterized protein.	Uncharacterized protein.	0.861
C3Y937_BRAFL	C3YQX9_BRAFL	C3Y937	C3YQX9	Uncharacterized protein.	XPA_C domain-containing protein.	0.993
C3Y937_BRAFL	C3ZMJ6_BRAFL	C3Y937	C3ZMJ6	Uncharacterized protein.	CPSF_A domain-containing protein.	0.838
C3YAV9_BRAFL	C3XVD1_BRAFL	C3YAV9	C3XVD1	Uncharacterized protein.	Uncharacterized protein.	0.444
C3YAV9_BRAFL	C3Y937_BRAFL	C3YAV9	C3Y937	Uncharacterized protein.	Uncharacterized protein.	0.861
C3YAV9_BRAFL	C3YQX9_BRAFL	C3YAV9	C3YQX9	Uncharacterized protein.	XPA_C domain-containing protein.	0.962
C3YAV9_BRAFL	C3ZMJ6_BRAFL	C3YAV9	C3ZMJ6	Uncharacterized protein.	CPSF_A domain-containing protein.	0.852
C3YAV9_BRAFL	C3ZMU1_BRAFL	C3YAV9	C3ZMU1	Uncharacterized protein.	Uncharacterized protein.	0.444
C3YKX2_BRAFL	C3YQX9_BRAFL	C3YKX2	C3YQX9	Deacetylase sirtuin-type domain-containing protein.	XPA_C domain-containing protein.	0.488
C3YQX9_BRAFL	C3Y937_BRAFL	C3YQX9	C3Y937	XPA_C domain-containing protein.	Uncharacterized protein.	0.993
C3YQX9_BRAFL	C3YAV9_BRAFL	C3YQX9	C3YAV9	XPA_C domain-containing protein.	Uncharacterized protein.	0.962
C3YQX9_BRAFL	C3YKX2_BRAFL	C3YQX9	C3YKX2	XPA_C domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.488
C3YQX9_BRAFL	C3YTV5_BRAFL	C3YQX9	C3YTV5	XPA_C domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.507
C3YQX9_BRAFL	C3ZMJ6_BRAFL	C3YQX9	C3ZMJ6	XPA_C domain-containing protein.	CPSF_A domain-containing protein.	0.853
C3YTV5_BRAFL	C3XVD1_BRAFL	C3YTV5	C3XVD1	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.976
C3YTV5_BRAFL	C3YQX9_BRAFL	C3YTV5	C3YQX9	Uncharacterized protein; Belongs to the actin family.	XPA_C domain-containing protein.	0.507