(78 nodes) Cellular response to radiation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XV97_BRAFL	Uncharacterized protein. (278 aa)
	C3ZZH4_BRAFL	Uncharacterized protein. (541 aa)
	C3ZY28_BRAFL	CARD domain-containing protein. (105 aa)
	C3ZY21_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (246 aa)
	C3ZXI3_BRAFL	TAZ-type domain-containing protein. (131 aa)
	C3ZV28_BRAFL	Uncharacterized protein. (383 aa)
	C3ZUG6_BRAFL	Uncharacterized protein. (3563 aa)
	C3ZUB1_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (352 aa)
	C3ZSM7_BRAFL	Ku domain-containing protein. (716 aa)
	C3ZR83_BRAFL	Uncharacterized protein. (459 aa)
	C3ZQ72_BRAFL	Uncharacterized protein. (173 aa)
	C3ZNX8_BRAFL	Uncharacterized protein. (233 aa)
	C3ZNW9_BRAFL	ERCC4 domain-containing protein. (515 aa)
	C3ZMU1_BRAFL	Uncharacterized protein. (1878 aa)
	C3ZLH8_BRAFL	Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. (804 aa)
	C3ZIA7_BRAFL	Helicase C-terminal domain-containing protein. (118 aa)
	C3ZHI0_BRAFL	Helicase ATP-binding domain-containing protein. (504 aa)
	C3ZFV6_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (440 aa)
	C3ZF52_BRAFL	CULLIN_2 domain-containing protein; Belongs to the cullin family. (822 aa)
	C3ZEH9_BRAFL	Uncharacterized protein. (52 aa)
	C3ZEG1_BRAFL	Rhomboid domain-containing protein. (297 aa)
	C3ZD95_BRAFL	Uncharacterized protein. (499 aa)
	C3ZBQ9_BRAFL	Helicase ATP-binding domain-containing protein. (270 aa)
	C3ZBH0_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (579 aa)
	C3Z9X0_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2531 aa)
	C3Z6I4_BRAFL	Uncharacterized protein. (107 aa)
	C3Z3L2_BRAFL	UmuC domain-containing protein. (354 aa)
	C3Z3A4_BRAFL	Uncharacterized protein. (676 aa)
	C3Z388_BRAFL	Metallophos domain-containing protein. (425 aa)
	C3Z378_BRAFL	Metallophos domain-containing protein. (430 aa)
	C3Z1F8_BRAFL	Ku domain-containing protein. (613 aa)
	C3YZM5_BRAFL	Uncharacterized protein. (453 aa)
	C3YZ86_BRAFL	Uncharacterized protein. (375 aa)
	C3YZ65_BRAFL	Uncharacterized protein; Belongs to the tumor necrosis factor family. (565 aa)
	C3YZ38_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (809 aa)
	C3YZ01_BRAFL	DNA ligase. (793 aa)
	C3YX63_BRAFL	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (354 aa)
	C3YW39_BRAFL	Uncharacterized protein. (2614 aa)
	C3YTV5_BRAFL	Uncharacterized protein; Belongs to the actin family. (655 aa)
	C3YR28_BRAFL	Uncharacterized protein. (667 aa)
	C3YQX9_BRAFL	XPA_C domain-containing protein. (259 aa)
	C3YPD4_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (262 aa)
	C3YMD2_BRAFL	Uncharacterized protein. (151 aa)
	C3YKX2_BRAFL	Deacetylase sirtuin-type domain-containing protein. (312 aa)
	C3YKR1_BRAFL	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (666 aa)
	C3YJI7_BRAFL	Uncharacterized protein. (923 aa)
	C3YIR7_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (529 aa)
	C3YH73_BRAFL	FAT domain-containing protein. (2357 aa)
	C3YH71_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (553 aa)
	C3YFD7_BRAFL	Uncharacterized protein; Belongs to the MT-A70-like family. (568 aa)
	C3YCQ8_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (360 aa)
	C3YCM0_BRAFL	F-box domain-containing protein. (317 aa)
	C3YBI7_BRAFL	UmuC domain-containing protein. (493 aa)
	C3YBF4_BRAFL	Uncharacterized protein. (2359 aa)
	C3YAV9_BRAFL	Uncharacterized protein. (377 aa)
	C3Y937_BRAFL	Uncharacterized protein. (427 aa)
	C3Y8N4_BRAFL	Helicase C-terminal domain-containing protein. (591 aa)
	C3Y7M2_BRAFL	Uncharacterized protein; Belongs to the peptidase C19 family. (1318 aa)
	C3Y6U5_BRAFL	Uncharacterized protein. (360 aa)
	C3Y6A4_BRAFL	RuvB-like helicase; Belongs to the RuvB family. (468 aa)
	C3Y696_BRAFL	Uncharacterized protein. (304 aa)
	C3Y5K6_BRAFL	DNA polymerase. (1286 aa)
	C3Y4F4_BRAFL	Uncharacterized protein. (676 aa)
	C3Y4A1_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (499 aa)
	op12a	Go opsin; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (381 aa)
	C3Y396_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (242 aa)
	C3Y2J2_BRAFL	Uncharacterized protein. (2623 aa)
	C3Y254_BRAFL	PWWP domain-containing protein. (437 aa)
	C3Y166_BRAFL	S1 motif domain-containing protein. (289 aa)
	C3XVP9_BRAFL	Uncharacterized protein. (312 aa)
	C3XVD1_BRAFL	Uncharacterized protein. (3715 aa)
	C3XUC8_BRAFL	RWD domain-containing protein. (270 aa)
	C3XU62_BRAFL	Uncharacterized protein. (1010 aa)
	C3XT78_BRAFL	Uncharacterized protein. (458 aa)
	C3XS09_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (427 aa)
	C3XRZ6_BRAFL	Uncharacterized protein. (1538 aa)
	C3XR28_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (299 aa)
	C3ZMJ6_BRAFL	CPSF_A domain-containing protein. (1152 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRZ6_BRAFL	C3XUC8_BRAFL	C3XRZ6	C3XUC8	Uncharacterized protein.	RWD domain-containing protein.	0.424
C3XRZ6_BRAFL	C3Y166_BRAFL	C3XRZ6	C3Y166	Uncharacterized protein.	S1 motif domain-containing protein.	0.897
C3XS09_BRAFL	C3XT78_BRAFL	C3XS09	C3XT78	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.554
C3XS09_BRAFL	C3XV97_BRAFL	C3XS09	C3XV97	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.846
C3XS09_BRAFL	C3XVP9_BRAFL	C3XS09	C3XVP9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.872
C3XS09_BRAFL	C3Y254_BRAFL	C3XS09	C3Y254	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	PWWP domain-containing protein.	0.678
C3XS09_BRAFL	C3Y4F4_BRAFL	C3XS09	C3Y4F4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.704
C3XS09_BRAFL	C3Y5K6_BRAFL	C3XS09	C3Y5K6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DNA polymerase.	0.537
C3XS09_BRAFL	C3Y696_BRAFL	C3XS09	C3Y696	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.454
C3XS09_BRAFL	C3Y8N4_BRAFL	C3XS09	C3Y8N4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Helicase C-terminal domain-containing protein.	0.554
C3XS09_BRAFL	C3Y937_BRAFL	C3XS09	C3Y937	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.424
C3XS09_BRAFL	C3YBF4_BRAFL	C3XS09	C3YBF4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.965
C3XS09_BRAFL	C3YH71_BRAFL	C3XS09	C3YH71	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.707
C3XS09_BRAFL	C3YH73_BRAFL	C3XS09	C3YH73	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	FAT domain-containing protein.	0.707
C3XS09_BRAFL	C3YJI7_BRAFL	C3XS09	C3YJI7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.417
C3XS09_BRAFL	C3YKR1_BRAFL	C3XS09	C3YKR1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.554
C3XS09_BRAFL	C3YW39_BRAFL	C3XS09	C3YW39	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.832
C3XS09_BRAFL	C3YZ01_BRAFL	C3XS09	C3YZ01	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DNA ligase.	0.566
C3XS09_BRAFL	C3YZM5_BRAFL	C3XS09	C3YZM5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.554
C3XS09_BRAFL	C3Z1F8_BRAFL	C3XS09	C3Z1F8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Ku domain-containing protein.	0.882