(16 nodes) Cellular senescence network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XV95_BRAFL	Uncharacterized protein. (734 aa)
	C3XYZ3_BRAFL	MADS-box domain-containing protein. (534 aa)
	C3Y1S5_BRAFL	SMC_N domain-containing protein. (1096 aa)
	C3YKX2_BRAFL	Deacetylase sirtuin-type domain-containing protein. (312 aa)
	C3YMQ0_BRAFL	SP-RING-type domain-containing protein. (252 aa)
	C3YN24_BRAFL	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (889 aa)
	C3YQW4_BRAFL	Protein kinase domain-containing protein. (356 aa)
	C3YR44_BRAFL	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (724 aa)
	C3YV95_BRAFL	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (313 aa)
	C3YXX5_BRAFL	Uncharacterized protein. (724 aa)
	C3Z650_BRAFL	BHLH domain-containing protein. (147 aa)
	C3Z651_BRAFL	Uncharacterized protein. (666 aa)
	C3ZIW1_BRAFL	Uncharacterized protein. (174 aa)
	C3ZN31_BRAFL	BHLH domain-containing protein. (147 aa)
	C3ZS00_BRAFL	SMC_N domain-containing protein. (1059 aa)
	C3ZZH4_BRAFL	Uncharacterized protein. (541 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y1S5_BRAFL	C3YMQ0_BRAFL	C3Y1S5	C3YMQ0	SMC_N domain-containing protein.	SP-RING-type domain-containing protein.	0.999
C3Y1S5_BRAFL	C3ZS00_BRAFL	C3Y1S5	C3ZS00	SMC_N domain-containing protein.	SMC_N domain-containing protein.	0.999
C3Y1S5_BRAFL	C3ZZH4_BRAFL	C3Y1S5	C3ZZH4	SMC_N domain-containing protein.	Uncharacterized protein.	0.643
C3YKX2_BRAFL	C3ZIW1_BRAFL	C3YKX2	C3ZIW1	Deacetylase sirtuin-type domain-containing protein.	Uncharacterized protein.	0.954
C3YKX2_BRAFL	C3ZZH4_BRAFL	C3YKX2	C3ZZH4	Deacetylase sirtuin-type domain-containing protein.	Uncharacterized protein.	0.560
C3YMQ0_BRAFL	C3Y1S5_BRAFL	C3YMQ0	C3Y1S5	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.999
C3YMQ0_BRAFL	C3ZS00_BRAFL	C3YMQ0	C3ZS00	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.999
C3YQW4_BRAFL	C3ZIW1_BRAFL	C3YQW4	C3ZIW1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.498
C3ZIW1_BRAFL	C3YKX2_BRAFL	C3ZIW1	C3YKX2	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.954
C3ZIW1_BRAFL	C3YQW4_BRAFL	C3ZIW1	C3YQW4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.498
C3ZIW1_BRAFL	C3ZZH4_BRAFL	C3ZIW1	C3ZZH4	Uncharacterized protein.	Uncharacterized protein.	0.733
C3ZS00_BRAFL	C3Y1S5_BRAFL	C3ZS00	C3Y1S5	SMC_N domain-containing protein.	SMC_N domain-containing protein.	0.999
C3ZS00_BRAFL	C3YMQ0_BRAFL	C3ZS00	C3YMQ0	SMC_N domain-containing protein.	SP-RING-type domain-containing protein.	0.999
C3ZS00_BRAFL	C3ZZH4_BRAFL	C3ZS00	C3ZZH4	SMC_N domain-containing protein.	Uncharacterized protein.	0.438
C3ZZH4_BRAFL	C3Y1S5_BRAFL	C3ZZH4	C3Y1S5	Uncharacterized protein.	SMC_N domain-containing protein.	0.643
C3ZZH4_BRAFL	C3YKX2_BRAFL	C3ZZH4	C3YKX2	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.560
C3ZZH4_BRAFL	C3ZIW1_BRAFL	C3ZZH4	C3ZIW1	Uncharacterized protein.	Uncharacterized protein.	0.733
C3ZZH4_BRAFL	C3ZS00_BRAFL	C3ZZH4	C3ZS00	Uncharacterized protein.	SMC_N domain-containing protein.	0.438