(20 nodes) Telomeric loop disassembly network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YV14_BRAFL	Helicase C-terminal domain-containing protein. (503 aa)
	C3YV12_BRAFL	Helicase C-terminal domain-containing protein. (807 aa)
	C3YV10_BRAFL	Uncharacterized protein. (133 aa)
	C3YZM5_BRAFL	Uncharacterized protein. (453 aa)
	C3YV06_BRAFL	CCHC-type domain-containing protein. (999 aa)
	C3YNS7_BRAFL	Uncharacterized protein. (277 aa)
	C3YKR1_BRAFL	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (666 aa)
	C3YD16_BRAFL	Telo_bind domain-containing protein. (396 aa)
	C3Y8N4_BRAFL	Helicase C-terminal domain-containing protein. (591 aa)
	C3XT78_BRAFL	Uncharacterized protein. (458 aa)
	C3YV08_BRAFL	Uncharacterized protein. (196 aa)
	C3Z6I4_BRAFL	Uncharacterized protein. (107 aa)
	C3ZAS6_BRAFL	Helicase C-terminal domain-containing protein. (606 aa)
	C3ZAS8_BRAFL	Uncharacterized protein. (1098 aa)
	C3ZBQ9_BRAFL	Helicase ATP-binding domain-containing protein. (270 aa)
	C3ZHI0_BRAFL	Helicase ATP-binding domain-containing protein. (504 aa)
	C3ZQ21_BRAFL	HTH myb-type domain-containing protein. (55 aa)
	C3ZR83_BRAFL	Uncharacterized protein. (459 aa)
	C3ZZH4_BRAFL	Uncharacterized protein. (541 aa)
	C4A088_BRAFL	BTB domain-containing protein. (2428 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XT78_BRAFL	C3YV06_BRAFL	C3XT78	C3YV06	Uncharacterized protein.	CCHC-type domain-containing protein.	0.544
C3XT78_BRAFL	C3ZZH4_BRAFL	C3XT78	C3ZZH4	Uncharacterized protein.	Uncharacterized protein.	0.457
C3Y8N4_BRAFL	C3YV06_BRAFL	C3Y8N4	C3YV06	Helicase C-terminal domain-containing protein.	CCHC-type domain-containing protein.	0.544
C3Y8N4_BRAFL	C3YZM5_BRAFL	C3Y8N4	C3YZM5	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.536
C3Y8N4_BRAFL	C3ZAS8_BRAFL	C3Y8N4	C3ZAS8	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.520
C3Y8N4_BRAFL	C3ZBQ9_BRAFL	C3Y8N4	C3ZBQ9	Helicase C-terminal domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.537
C3Y8N4_BRAFL	C3ZHI0_BRAFL	C3Y8N4	C3ZHI0	Helicase C-terminal domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.536
C3Y8N4_BRAFL	C3ZZH4_BRAFL	C3Y8N4	C3ZZH4	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.487
C3YD16_BRAFL	C3ZQ21_BRAFL	C3YD16	C3ZQ21	Telo_bind domain-containing protein.	HTH myb-type domain-containing protein.	0.977
C3YD16_BRAFL	C3ZZH4_BRAFL	C3YD16	C3ZZH4	Telo_bind domain-containing protein.	Uncharacterized protein.	0.805
C3YKR1_BRAFL	C3YZM5_BRAFL	C3YKR1	C3YZM5	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	Uncharacterized protein.	0.920
C3YKR1_BRAFL	C3ZZH4_BRAFL	C3YKR1	C3ZZH4	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	Uncharacterized protein.	0.456
C3YNS7_BRAFL	C3YV08_BRAFL	C3YNS7	C3YV08	Uncharacterized protein.	Uncharacterized protein.	0.500
C3YNS7_BRAFL	C3YV10_BRAFL	C3YNS7	C3YV10	Uncharacterized protein.	Uncharacterized protein.	0.460
C3YV06_BRAFL	C3XT78_BRAFL	C3YV06	C3XT78	CCHC-type domain-containing protein.	Uncharacterized protein.	0.544
C3YV06_BRAFL	C3Y8N4_BRAFL	C3YV06	C3Y8N4	CCHC-type domain-containing protein.	Helicase C-terminal domain-containing protein.	0.544
C3YV06_BRAFL	C3YV12_BRAFL	C3YV06	C3YV12	CCHC-type domain-containing protein.	Helicase C-terminal domain-containing protein.	0.493
C3YV06_BRAFL	C3YV14_BRAFL	C3YV06	C3YV14	CCHC-type domain-containing protein.	Helicase C-terminal domain-containing protein.	0.578
C3YV06_BRAFL	C3YZM5_BRAFL	C3YV06	C3YZM5	CCHC-type domain-containing protein.	Uncharacterized protein.	0.544
C3YV06_BRAFL	C3ZAS6_BRAFL	C3YV06	C3ZAS6	CCHC-type domain-containing protein.	Helicase C-terminal domain-containing protein.	0.518