(30 nodes) Autophagosome maturation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XTH3_BRAFL	Uncharacterized protein. (217 aa)
	C3XU59_BRAFL	Uncharacterized protein. (120 aa)
	C3XVT2_BRAFL	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (575 aa)
	C3XXL1_BRAFL	MFS domain-containing protein. (656 aa)
	C3XYM7_BRAFL	Uncharacterized protein. (1314 aa)
	C3XZQ7_BRAFL	Uncharacterized protein. (1050 aa)
	C3XZQ8_BRAFL	Uncharacterized protein. (1351 aa)
	C3XZV0_BRAFL	Uncharacterized protein. (887 aa)
	C3Y041_BRAFL	Uncharacterized protein. (701 aa)
	C3Y0C3_BRAFL	Uncharacterized protein. (516 aa)
	C3Y1V6_BRAFL	Phosphatidylinositol 3-kinase catalytic subunit type 3. (890 aa)
	C3YC64_BRAFL	Uncharacterized protein. (324 aa)
	C3YDX7_BRAFL	Uncharacterized protein. (322 aa)
	C3YEV2_BRAFL	Uncharacterized protein. (288 aa)
	C3YH60_BRAFL	Uncharacterized protein. (238 aa)
	C3YIV6_BRAFL	Uncharacterized protein. (222 aa)
	C3YL87_BRAFL	Uncharacterized protein. (135 aa)
	C3YL88_BRAFL	Uncharacterized protein. (980 aa)
	C3YTH4_BRAFL	Uncharacterized protein; Belongs to the AAA ATPase family. (718 aa)
	C3YTN9_BRAFL	Uncharacterized protein. (128 aa)
	C3YXH4_BRAFL	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family. (761 aa)
	C3YXT0_BRAFL	Uncharacterized protein. (694 aa)
	C3Z4R9_BRAFL	Uncharacterized protein. (124 aa)
	C3Z5U7_BRAFL	Uncharacterized protein. (648 aa)
	C3Z7E0_BRAFL	Uncharacterized protein. (897 aa)
	C3ZA99_BRAFL	Uncharacterized protein. (557 aa)
	C3ZE24_BRAFL	Uncharacterized protein. (303 aa)
	C3ZIW0_BRAFL	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family. (795 aa)
	C3ZMF8_BRAFL	Uncharacterized protein. (677 aa)
	C3ZYW7_BRAFL	Uncharacterized protein. (1334 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTH3_BRAFL	C3XU59_BRAFL	C3XTH3	C3XU59	Uncharacterized protein.	Uncharacterized protein.	0.448
C3XTH3_BRAFL	C3YIV6_BRAFL	C3XTH3	C3YIV6	Uncharacterized protein.	Uncharacterized protein.	0.904
C3XTH3_BRAFL	C3YTH4_BRAFL	C3XTH3	C3YTH4	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.512
C3XTH3_BRAFL	C3Z4R9_BRAFL	C3XTH3	C3Z4R9	Uncharacterized protein.	Uncharacterized protein.	0.410
C3XU59_BRAFL	C3XTH3_BRAFL	C3XU59	C3XTH3	Uncharacterized protein.	Uncharacterized protein.	0.448
C3XU59_BRAFL	C3XYM7_BRAFL	C3XU59	C3XYM7	Uncharacterized protein.	Uncharacterized protein.	0.668
C3XU59_BRAFL	C3Y0C3_BRAFL	C3XU59	C3Y0C3	Uncharacterized protein.	Uncharacterized protein.	0.724
C3XU59_BRAFL	C3Y1V6_BRAFL	C3XU59	C3Y1V6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.823
C3XU59_BRAFL	C3YIV6_BRAFL	C3XU59	C3YIV6	Uncharacterized protein.	Uncharacterized protein.	0.448
C3XU59_BRAFL	C3Z4R9_BRAFL	C3XU59	C3Z4R9	Uncharacterized protein.	Uncharacterized protein.	0.502
C3XU59_BRAFL	C3ZE24_BRAFL	C3XU59	C3ZE24	Uncharacterized protein.	Uncharacterized protein.	0.668
C3XU59_BRAFL	C3ZYW7_BRAFL	C3XU59	C3ZYW7	Uncharacterized protein.	Uncharacterized protein.	0.668
C3XVT2_BRAFL	C3YEV2_BRAFL	C3XVT2	C3YEV2	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein.	0.626
C3XVT2_BRAFL	C3YXH4_BRAFL	C3XVT2	C3YXH4	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	0.976
C3XVT2_BRAFL	C3ZIW0_BRAFL	C3XVT2	C3ZIW0	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	0.976
C3XYM7_BRAFL	C3XU59_BRAFL	C3XYM7	C3XU59	Uncharacterized protein.	Uncharacterized protein.	0.668
C3XYM7_BRAFL	C3Y0C3_BRAFL	C3XYM7	C3Y0C3	Uncharacterized protein.	Uncharacterized protein.	0.986
C3XYM7_BRAFL	C3Y1V6_BRAFL	C3XYM7	C3Y1V6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.987
C3XYM7_BRAFL	C3Z4R9_BRAFL	C3XYM7	C3Z4R9	Uncharacterized protein.	Uncharacterized protein.	0.557
C3XYM7_BRAFL	C3ZE24_BRAFL	C3XYM7	C3ZE24	Uncharacterized protein.	Uncharacterized protein.	0.966