(93 nodes) Modification-dependent protein binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZHW5_BRAFL	SGF29 C-terminal domain-containing protein. (339 aa)
	C3ZKZ1_BRAFL	Uncharacterized protein. (516 aa)
	C3ZKZ3_BRAFL	Uncharacterized protein. (1638 aa)
	C3ZMT1_BRAFL	Uncharacterized protein. (2552 aa)
	C3ZPA3_BRAFL	Daxx domain-containing protein. (323 aa)
	C3ZPB3_BRAFL	NET domain-containing protein. (645 aa)
	C3ZQ69_BRAFL	Uncharacterized protein. (1679 aa)
	C3ZQX4_BRAFL	Uncharacterized protein. (1993 aa)
	C3ZSF3_BRAFL	Inhibitor of growth protein. (255 aa)
	C3ZTG5_BRAFL	PHD-type domain-containing protein. (427 aa)
	C3ZTG7_BRAFL	Mtf2_C domain-containing protein. (391 aa)
	C3ZV19_BRAFL	ANK_REP_REGION domain-containing protein. (621 aa)
	C3ZVQ8_BRAFL	UBZ_FAAP20 domain-containing protein. (583 aa)
	C3ZVY4_BRAFL	Bromo domain-containing protein. (1514 aa)
	C3ZW21_BRAFL	Uncharacterized protein. (624 aa)
	C3ZY48_BRAFL	Chromo domain-containing protein. (56 aa)
	C3ZYN0_BRAFL	Uncharacterized protein. (1246 aa)
	C3ZYU6_BRAFL	OTU domain-containing protein. (909 aa)
	C3ZYU8_BRAFL	Uncharacterized protein. (1550 aa)
	C4A0R5_BRAFL	Inhibitor of growth protein. (230 aa)
	C3ZYU9_BRAFL	OTU domain-containing protein. (264 aa)
	BABAM2	BRISC and BRCA1-A complex member 2; Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes 'Lys-63'- linked ubiquitin on histones H2A and H2AX. In the BRCA1-A complex, it acts as an adapter that bridges the interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integri [...] (383 aa)
	C3XPH5_BRAFL	Uncharacterized protein. (501 aa)
	C3XQ87_BRAFL	Uncharacterized protein. (224 aa)
	C3XQN6_BRAFL	Uncharacterized protein. (516 aa)
	C3XRE6_BRAFL	Uncharacterized protein. (1129 aa)
	C3XRL6_BRAFL	Uncharacterized protein. (299 aa)
	C3XU40_BRAFL	Uncharacterized protein. (2155 aa)
	C3XUW8_BRAFL	Uncharacterized protein. (270 aa)
	C3XVY7_BRAFL	CW-type domain-containing protein. (465 aa)
	C3XWU0_BRAFL	PWWP domain-containing protein. (243 aa)
	C3XX59_BRAFL	Uncharacterized protein. (816 aa)
	C3XXF8_BRAFL	Uncharacterized protein. (554 aa)
	C3XXI8_BRAFL	MYND-type domain-containing protein. (719 aa)
	C3XY59_BRAFL	Uncharacterized protein. (124 aa)
	C3XZD0_BRAFL	Uncharacterized protein. (427 aa)
	C3Y0H5_BRAFL	Uncharacterized protein. (355 aa)
	C3Y1X0_BRAFL	Uncharacterized protein. (359 aa)
	C3Y495_BRAFL	MPN domain-containing protein. (404 aa)
	C3Y5T5_BRAFL	VWFA domain-containing protein. (401 aa)
	C3Y8U7_BRAFL	Uncharacterized protein. (430 aa)
	C3Y8U9_BRAFL	Uncharacterized protein. (418 aa)
	C3YA14_BRAFL	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (601 aa)
	C3YBF4_BRAFL	Uncharacterized protein. (2359 aa)
	C3YBX8_BRAFL	Uncharacterized protein. (714 aa)
	C3YCI4_BRAFL	Uncharacterized protein. (315 aa)
	C3YFI8_BRAFL	Bromo domain-containing protein. (113 aa)
	C3YFI9_BRAFL	Uncharacterized protein. (69 aa)
	C3YGW3_BRAFL	Uncharacterized protein. (1825 aa)
	C3YH59_BRAFL	RanBP2-type domain-containing protein. (735 aa)
	C3YH69_BRAFL	Uncharacterized protein. (2862 aa)
	C3YID9_BRAFL	Uncharacterized protein. (1932 aa)
	C3YJ46_BRAFL	Uncharacterized protein. (690 aa)
	C3YJQ0_BRAFL	MPN domain-containing protein. (268 aa)
	C3YKI4_BRAFL	Rieske domain-containing protein. (129 aa)
	C3YLR5_BRAFL	Uncharacterized protein. (451 aa)
	C3YLR6_BRAFL	Uncharacterized protein. (142 aa)
	C3YMN6_BRAFL	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1278 aa)
	C3YMT0_BRAFL	Uncharacterized protein. (292 aa)
	C3YPU4_BRAFL	CCHC NOA-type domain-containing protein. (873 aa)
	C3YPW2_BRAFL	Uncharacterized protein. (578 aa)
	C3YQ63_BRAFL	OTU domain-containing protein. (647 aa)
	C3YRF3_BRAFL	Uncharacterized protein. (449 aa)
	C3YRF5_BRAFL	Uncharacterized protein; Belongs to the peptidase M16 family. (454 aa)
	C3YTH4_BRAFL	Uncharacterized protein; Belongs to the AAA ATPase family. (718 aa)
	C3YVC5_BRAFL	Uncharacterized protein. (1003 aa)
	C3YVE1_BRAFL	Uncharacterized protein. (984 aa)
	C3YVL7_BRAFL	PHD-type domain-containing protein. (68 aa)
	C3YVM0_BRAFL	SAP domain-containing protein. (299 aa)
	C3YX75_BRAFL	Uncharacterized protein. (1030 aa)
	C3YXD5_BRAFL	OTU domain-containing protein. (226 aa)
	C3YXE8_BRAFL	OTU domain-containing protein. (845 aa)
	C3YXI1_BRAFL	Uncharacterized protein. (507 aa)
	C3YZA3_BRAFL	FCS-type domain-containing protein. (543 aa)
	C3YZC3_BRAFL	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (307 aa)
	C3YZR1_BRAFL	Uncharacterized protein. (490 aa)
	C3Z0K4_BRAFL	MINDY_DUB domain-containing protein. (270 aa)
	C3Z1B1_BRAFL	Uncharacterized protein. (176 aa)
	C3Z2G5_BRAFL	WD_REPEATS_REGION domain-containing protein. (495 aa)
	C3Z2H0_BRAFL	Cnd1 domain-containing protein. (1141 aa)
	C3Z3Y7_BRAFL	Uncharacterized protein. (241 aa)
	C3Z479_BRAFL	WD_REPEATS_REGION domain-containing protein. (742 aa)
	C3Z4P2_BRAFL	Inhibitor of growth protein. (281 aa)
	C3Z6P7_BRAFL	Chromo domain-containing protein. (431 aa)
	C3Z6P8_BRAFL	Chromo domain-containing protein. (369 aa)
	C3Z6P9_BRAFL	Chromo domain-containing protein. (389 aa)
	C3Z809_BRAFL	Uncharacterized protein. (720 aa)
	C3Z8L5_BRAFL	Uncharacterized protein. (559 aa)
	C3Z9G3_BRAFL	Ubiquitin-like domain-containing protein. (1268 aa)
	C3ZAD7_BRAFL	Uncharacterized protein. (789 aa)
	C3ZBE0_BRAFL	WD_REPEATS_REGION domain-containing protein. (477 aa)
	C3ZET1_BRAFL	Uncharacterized protein. (632 aa)
	C3ZET3_BRAFL	RING-type domain-containing protein. (121 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BABAM2	C3XRL6_BRAFL	B6NXD5	C3XRL6	BRISC and BRCA1-A complex member 2; Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes 'Lys-63'- linked ubiquitin on histones H2A and H2AX. In the BRCA1-A complex, it acts as an adapter that bridges the interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integri [...]	Uncharacterized protein.	0.543
BABAM2	C3Y495_BRAFL	B6NXD5	C3Y495	BRISC and BRCA1-A complex member 2; Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes 'Lys-63'- linked ubiquitin on histones H2A and H2AX. In the BRCA1-A complex, it acts as an adapter that bridges the interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integri [...]	MPN domain-containing protein.	0.970
BABAM2	C3YBF4_BRAFL	B6NXD5	C3YBF4	BRISC and BRCA1-A complex member 2; Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes 'Lys-63'- linked ubiquitin on histones H2A and H2AX. In the BRCA1-A complex, it acts as an adapter that bridges the interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integri [...]	Uncharacterized protein.	0.465
BABAM2	C3YJQ0_BRAFL	B6NXD5	C3YJQ0	BRISC and BRCA1-A complex member 2; Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes 'Lys-63'- linked ubiquitin on histones H2A and H2AX. In the BRCA1-A complex, it acts as an adapter that bridges the interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integri [...]	MPN domain-containing protein.	0.986
BABAM2	C3ZET3_BRAFL	B6NXD5	C3ZET3	BRISC and BRCA1-A complex member 2; Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes 'Lys-63'- linked ubiquitin on histones H2A and H2AX. In the BRCA1-A complex, it acts as an adapter that bridges the interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integri [...]	RING-type domain-containing protein.	0.484
C3XQ87_BRAFL	C3YLR6_BRAFL	C3XQ87	C3YLR6	Uncharacterized protein.	Uncharacterized protein.	0.784
C3XQ87_BRAFL	C3YVL7_BRAFL	C3XQ87	C3YVL7	Uncharacterized protein.	PHD-type domain-containing protein.	0.896
C3XQ87_BRAFL	C3YZA3_BRAFL	C3XQ87	C3YZA3	Uncharacterized protein.	FCS-type domain-containing protein.	0.421
C3XQ87_BRAFL	C3ZAD7_BRAFL	C3XQ87	C3ZAD7	Uncharacterized protein.	Uncharacterized protein.	0.429
C3XQ87_BRAFL	C3ZHW5_BRAFL	C3XQ87	C3ZHW5	Uncharacterized protein.	SGF29 C-terminal domain-containing protein.	0.596
C3XQ87_BRAFL	C3ZPB3_BRAFL	C3XQ87	C3ZPB3	Uncharacterized protein.	NET domain-containing protein.	0.685
C3XQ87_BRAFL	C3ZQ69_BRAFL	C3XQ87	C3ZQ69	Uncharacterized protein.	Uncharacterized protein.	0.605
C3XQ87_BRAFL	C3ZSF3_BRAFL	C3XQ87	C3ZSF3	Uncharacterized protein.	Inhibitor of growth protein.	0.414
C3XQ87_BRAFL	C4A0R5_BRAFL	C3XQ87	C4A0R5	Uncharacterized protein.	Inhibitor of growth protein.	0.414
C3XQN6_BRAFL	C3Z2G5_BRAFL	C3XQN6	C3Z2G5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.501
C3XQN6_BRAFL	C3ZHW5_BRAFL	C3XQN6	C3ZHW5	Uncharacterized protein.	SGF29 C-terminal domain-containing protein.	0.524
C3XRE6_BRAFL	C3Y1X0_BRAFL	C3XRE6	C3Y1X0	Uncharacterized protein.	Uncharacterized protein.	0.478
C3XRE6_BRAFL	C3YCI4_BRAFL	C3XRE6	C3YCI4	Uncharacterized protein.	Uncharacterized protein.	0.699
C3XRE6_BRAFL	C3YPW2_BRAFL	C3XRE6	C3YPW2	Uncharacterized protein.	Uncharacterized protein.	0.450
C3XRE6_BRAFL	C3YTH4_BRAFL	C3XRE6	C3YTH4	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.659