(10 nodes) Cargo adaptor activity network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XVA5_BRAFL	Uncharacterized protein. (1268 aa)
	C3XXX7_BRAFL	PID domain-containing protein. (128 aa)
	C3Y0I1_BRAFL	Uncharacterized protein. (1805 aa)
	C3YIE0_BRAFL	Adaptin_N domain-containing protein. (1179 aa)
	C3Z1G4_BRAFL	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (950 aa)
	C3Z3J8_BRAFL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	C3Z4H3_BRAFL	Adaptin_N domain-containing protein. (436 aa)
	C3ZLV4_BRAFL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (351 aa)
	C3ZTB7_BRAFL	Uncharacterized protein. (1373 aa)
	C3XTT3_BRAFL	AP-1 complex subunit gamma. (846 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTT3_BRAFL	C3XVA5_BRAFL	C3XTT3	C3XVA5	AP-1 complex subunit gamma.	Uncharacterized protein.	0.717
C3XTT3_BRAFL	C3Y0I1_BRAFL	C3XTT3	C3Y0I1	AP-1 complex subunit gamma.	Uncharacterized protein.	0.444
C3XTT3_BRAFL	C3YIE0_BRAFL	C3XTT3	C3YIE0	AP-1 complex subunit gamma.	Adaptin_N domain-containing protein.	0.617
C3XTT3_BRAFL	C3Z1G4_BRAFL	C3XTT3	C3Z1G4	AP-1 complex subunit gamma.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.553
C3XTT3_BRAFL	C3Z3J8_BRAFL	C3XTT3	C3Z3J8	AP-1 complex subunit gamma.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.885
C3XTT3_BRAFL	C3Z4H3_BRAFL	C3XTT3	C3Z4H3	AP-1 complex subunit gamma.	Adaptin_N domain-containing protein.	0.759
C3XTT3_BRAFL	C3ZLV4_BRAFL	C3XTT3	C3ZLV4	AP-1 complex subunit gamma.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.913
C3XTT3_BRAFL	C3ZTB7_BRAFL	C3XTT3	C3ZTB7	AP-1 complex subunit gamma.	Uncharacterized protein.	0.540
C3XVA5_BRAFL	C3XTT3_BRAFL	C3XVA5	C3XTT3	Uncharacterized protein.	AP-1 complex subunit gamma.	0.717
C3XVA5_BRAFL	C3YIE0_BRAFL	C3XVA5	C3YIE0	Uncharacterized protein.	Adaptin_N domain-containing protein.	0.531
C3XVA5_BRAFL	C3Z4H3_BRAFL	C3XVA5	C3Z4H3	Uncharacterized protein.	Adaptin_N domain-containing protein.	0.661
C3XVA5_BRAFL	C3ZTB7_BRAFL	C3XVA5	C3ZTB7	Uncharacterized protein.	Uncharacterized protein.	0.598
C3XXX7_BRAFL	C3Y0I1_BRAFL	C3XXX7	C3Y0I1	PID domain-containing protein.	Uncharacterized protein.	0.814
C3XXX7_BRAFL	C3Z1G4_BRAFL	C3XXX7	C3Z1G4	PID domain-containing protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.588
C3XXX7_BRAFL	C3Z3J8_BRAFL	C3XXX7	C3Z3J8	PID domain-containing protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.636
C3XXX7_BRAFL	C3ZLV4_BRAFL	C3XXX7	C3ZLV4	PID domain-containing protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.634
C3Y0I1_BRAFL	C3XTT3_BRAFL	C3Y0I1	C3XTT3	Uncharacterized protein.	AP-1 complex subunit gamma.	0.444
C3Y0I1_BRAFL	C3XXX7_BRAFL	C3Y0I1	C3XXX7	Uncharacterized protein.	PID domain-containing protein.	0.814
C3Y0I1_BRAFL	C3YIE0_BRAFL	C3Y0I1	C3YIE0	Uncharacterized protein.	Adaptin_N domain-containing protein.	0.444
C3Y0I1_BRAFL	C3Z3J8_BRAFL	C3Y0I1	C3Z3J8	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.786