(37 nodes) Positive regulation of cell cycle phase transition network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZV28_BRAFL	Uncharacterized protein. (383 aa)
	C3XPH9_BRAFL	Uncharacterized protein. (412 aa)
	C3XPI0_BRAFL	Bin3-type SAM domain-containing protein. (192 aa)
	C3XPW3_BRAFL	Uncharacterized protein. (484 aa)
	C3XR20_BRAFL	Uncharacterized protein. (237 aa)
	C3XTY8_BRAFL	Uncharacterized protein. (581 aa)
	C3Y0R7_BRAFL	ANAPC5 domain-containing protein. (747 aa)
	C3Y136_BRAFL	Lactamase_B domain-containing protein. (202 aa)
	C3Y1Y4_BRAFL	Death domain-containing protein. (561 aa)
	C3Y9A3_BRAFL	ATPase_AAA_core domain-containing protein. (2025 aa)
	C3YBG7_BRAFL	RING-type domain-containing protein. (89 aa)
	C3YCQ9_BRAFL	Uncharacterized protein. (545 aa)
	C3YEG7_BRAFL	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (181 aa)
	C3YJB3_BRAFL	WD_REPEATS_REGION domain-containing protein. (595 aa)
	C3YK31_BRAFL	Uncharacterized protein. (537 aa)
	C3YL59_BRAFL	Mitogen-activated protein kinase. (321 aa)
	C3YLR9_BRAFL	Lactamase_B domain-containing protein. (205 aa)
	C3YMQ0_BRAFL	SP-RING-type domain-containing protein. (252 aa)
	C3YN20_BRAFL	Uncharacterized protein. (687 aa)
	C3YT31_BRAFL	Uncharacterized protein. (293 aa)
	C3YYK3_BRAFL	TPR_REGION domain-containing protein. (854 aa)
	C3YZU1_BRAFL	Uncharacterized protein. (500 aa)
	C3YZV2_BRAFL	WD_REPEATS_REGION domain-containing protein. (409 aa)
	C3Z8A2_BRAFL	RB_A domain-containing protein. (305 aa)
	C3ZCU0_BRAFL	Mitogen-activated protein kinase. (515 aa)
	C3ZDY2_BRAFL	CULLIN_2 domain-containing protein; Belongs to the cullin family. (753 aa)
	C3ZF52_BRAFL	CULLIN_2 domain-containing protein; Belongs to the cullin family. (822 aa)
	C3ZG24_BRAFL	Uncharacterized protein. (536 aa)
	C3ZKM1_BRAFL	Protein kinase domain-containing protein. (535 aa)
	C3ZLP9_BRAFL	TPR_REGION domain-containing protein. (575 aa)
	C3ZMC2_BRAFL	Sm domain-containing protein. (130 aa)
	C3ZNF9_BRAFL	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (787 aa)
	C3ZNJ6_BRAFL	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (289 aa)
	C3ZQP5_BRAFL	Disintegrin domain-containing protein. (277 aa)
	C3ZQP6_BRAFL	Peptidase M12B domain-containing protein. (99 aa)
	C3ZV23_BRAFL	Uncharacterized protein. (224 aa)
	C3ZV25_BRAFL	Uncharacterized protein. (223 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y0R7_BRAFL	C3YBG7_BRAFL	C3Y0R7	C3YBG7	ANAPC5 domain-containing protein.	RING-type domain-containing protein.	0.730
C3Y0R7_BRAFL	C3YCQ9_BRAFL	C3Y0R7	C3YCQ9	ANAPC5 domain-containing protein.	Uncharacterized protein.	0.999
C3Y0R7_BRAFL	C3YEG7_BRAFL	C3Y0R7	C3YEG7	ANAPC5 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.965
C3Y0R7_BRAFL	C3YK31_BRAFL	C3Y0R7	C3YK31	ANAPC5 domain-containing protein.	Uncharacterized protein.	0.999
C3Y0R7_BRAFL	C3YYK3_BRAFL	C3Y0R7	C3YYK3	ANAPC5 domain-containing protein.	TPR_REGION domain-containing protein.	0.999
C3Y0R7_BRAFL	C3ZLP9_BRAFL	C3Y0R7	C3ZLP9	ANAPC5 domain-containing protein.	TPR_REGION domain-containing protein.	0.999
C3Y9A3_BRAFL	C3ZF52_BRAFL	C3Y9A3	C3ZF52	ATPase_AAA_core domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.573
C3Y9A3_BRAFL	C3ZNF9_BRAFL	C3Y9A3	C3ZNF9	ATPase_AAA_core domain-containing protein.	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.473
C3Y9A3_BRAFL	C3ZV28_BRAFL	C3Y9A3	C3ZV28	ATPase_AAA_core domain-containing protein.	Uncharacterized protein.	0.462
C3YBG7_BRAFL	C3Y0R7_BRAFL	C3YBG7	C3Y0R7	RING-type domain-containing protein.	ANAPC5 domain-containing protein.	0.730
C3YBG7_BRAFL	C3YCQ9_BRAFL	C3YBG7	C3YCQ9	RING-type domain-containing protein.	Uncharacterized protein.	0.756
C3YBG7_BRAFL	C3YEG7_BRAFL	C3YBG7	C3YEG7	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.595
C3YBG7_BRAFL	C3YK31_BRAFL	C3YBG7	C3YK31	RING-type domain-containing protein.	Uncharacterized protein.	0.741
C3YBG7_BRAFL	C3YYK3_BRAFL	C3YBG7	C3YYK3	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.759
C3YBG7_BRAFL	C3ZDY2_BRAFL	C3YBG7	C3ZDY2	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.750
C3YBG7_BRAFL	C3ZF52_BRAFL	C3YBG7	C3ZF52	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.809
C3YBG7_BRAFL	C3ZLP9_BRAFL	C3YBG7	C3ZLP9	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.760
C3YCQ9_BRAFL	C3Y0R7_BRAFL	C3YCQ9	C3Y0R7	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.999
C3YCQ9_BRAFL	C3YBG7_BRAFL	C3YCQ9	C3YBG7	Uncharacterized protein.	RING-type domain-containing protein.	0.756
C3YCQ9_BRAFL	C3YEG7_BRAFL	C3YCQ9	C3YEG7	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.939