(100 nodes) Regulation of organelle assembly network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y9V0_BRAFL	Uncharacterized protein. (840 aa)
	C3YIW3_BRAFL	Uncharacterized protein. (356 aa)
	C3YJP8_BRAFL	Uncharacterized protein. (141 aa)
	C3YKV1_BRAFL	RING-type domain-containing protein. (894 aa)
	C3YKW9_BRAFL	Endo/exonuclease/phosphatase domain-containing protein. (554 aa)
	C3YL59_BRAFL	Mitogen-activated protein kinase. (321 aa)
	C3YM28_BRAFL	PX domain-containing protein. (428 aa)
	C3YR64_BRAFL	Rab-GAP TBC domain-containing protein. (133 aa)
	C3YR68_BRAFL	Rab-GAP TBC domain-containing protein. (473 aa)
	C3YRE8_BRAFL	Notochord homeobox-like protein. (281 aa)
	C3YRQ9_BRAFL	POLO box domain-containing protein. (158 aa)
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1288 aa)
	C3YT31_BRAFL	Uncharacterized protein. (293 aa)
	C3YTZ3_BRAFL	Uncharacterized protein. (549 aa)
	C3YUV2_BRAFL	TPR_REGION domain-containing protein. (151 aa)
	C3YV23_BRAFL	Uncharacterized protein. (872 aa)
	C3YVF5_BRAFL	Rab-GAP TBC domain-containing protein. (993 aa)
	C3YW45_BRAFL	PIPK domain-containing protein. (408 aa)
	C3YW82_BRAFL	Rab-GAP TBC domain-containing protein. (341 aa)
	C3YX97_BRAFL	UDENN FLCN/SMCR8-type domain-containing protein. (996 aa)
	C3YXY3_BRAFL	Uncharacterized protein. (377 aa)
	C3YYJ0_BRAFL	Uncharacterized protein. (2116 aa)
	C3Z095_BRAFL	Uncharacterized protein. (959 aa)
	C3Z3W6_BRAFL	Uncharacterized protein. (376 aa)
	C3Z481_BRAFL	Uncharacterized protein. (304 aa)
	C3Z4Z9_BRAFL	Uncharacterized protein. (226 aa)
	C3Z5S4_BRAFL	Uncharacterized protein. (457 aa)
	C3Z6I7_BRAFL	UEV domain-containing protein. (115 aa)
	C3Z6I8_BRAFL	UEV domain-containing protein. (112 aa)
	C3Z7E5_BRAFL	Uncharacterized protein. (1232 aa)
	C3Z7Q9_BRAFL	NOT2_3_5 domain-containing protein. (714 aa)
	C3Z7Y7_BRAFL	TPR_REGION domain-containing protein. (318 aa)
	C3ZAH8_BRAFL	Uncharacterized protein. (2208 aa)
	C3ZAI0_BRAFL	Uncharacterized protein. (206 aa)
	C3ZAI1_BRAFL	Uncharacterized protein. (181 aa)
	C3ZAJ1_BRAFL	Uncharacterized protein. (599 aa)
	C3ZB90_BRAFL	Uncharacterized protein. (1629 aa)
	C3ZBN6_BRAFL	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (320 aa)
	C3ZBQ7_BRAFL	Uncharacterized protein. (434 aa)
	C3ZCU0_BRAFL	Mitogen-activated protein kinase. (515 aa)
	C3ZF21_BRAFL	Uncharacterized protein. (1260 aa)
	C3ZGJ8_BRAFL	Uncharacterized protein. (363 aa)
	C3ZGJ9_BRAFL	Uncharacterized protein. (3187 aa)
	C3ZGP7_BRAFL	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1297 aa)
	C3ZHY5_BRAFL	SAM domain-containing protein. (438 aa)
	C3ZI67_BRAFL	TPR_REGION domain-containing protein. (987 aa)
	C3ZJI7_BRAFL	Rab-GAP TBC domain-containing protein. (289 aa)
	C3ZLD5_BRAFL	Uncharacterized protein. (2668 aa)
	C3ZLV7_BRAFL	PPP1R35_C domain-containing protein. (325 aa)
	C3ZM73_BRAFL	ULP_PROTEASE domain-containing protein. (1702 aa)
	C3ZNT2_BRAFL	Autophagy protein 5; Involved in autophagic vesicle formation. (261 aa)
	C3ZQC3_BRAFL	Uncharacterized protein. (1892 aa)
	C3ZR15_BRAFL	LRRCT domain-containing protein. (1003 aa)
	C3ZUX5_BRAFL	UEV domain-containing protein. (143 aa)
	C3ZXF0_BRAFL	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (642 aa)
	C3ZXS7_BRAFL	TPR_REGION domain-containing protein. (273 aa)
	C3ZXX8_BRAFL	Protein kinase domain-containing protein. (283 aa)
	C3ZYE3_BRAFL	Uncharacterized protein. (475 aa)
	C3ZYN6_BRAFL	Fibronectin type-III domain-containing protein. (1377 aa)
	C3ZYN8_BRAFL	Uncharacterized protein. (202 aa)
	C3ZYP0_BRAFL	Uncharacterized protein. (199 aa)
	C3ZYV4_BRAFL	Uncharacterized protein. (1042 aa)
	C3ZZX0_BRAFL	Protein kinase domain-containing protein. (287 aa)
	C4A0Y8_BRAFL	Uncharacterized protein. (907 aa)
	C3XPY9_BRAFL	Protein kinase domain-containing protein. (347 aa)
	C3XQF6_BRAFL	Uncharacterized protein. (422 aa)
	C3XQF7_BRAFL	Uncharacterized protein. (295 aa)
	C3XQF8_BRAFL	Uncharacterized protein. (257 aa)
	C3XRB2_BRAFL	Uncharacterized protein. (8372 aa)
	C3XSS2_BRAFL	PX domain-containing protein. (402 aa)
	C3XTH3_BRAFL	Uncharacterized protein. (217 aa)
	C3XTM6_BRAFL	FERM domain-containing protein. (561 aa)
	C3XU82_BRAFL	C2H2-type domain-containing protein. (171 aa)
	C3XUA0_BRAFL	CEP76-C2 domain-containing protein. (667 aa)
	C3XW25_BRAFL	Uncharacterized protein. (422 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (760 aa)
	C3XZ65_BRAFL	Uncharacterized protein. (350 aa)
	C3Y0K5_BRAFL	RAB3GAP2_N domain-containing protein. (262 aa)
	C3Y0K6_BRAFL	Uncharacterized protein. (149 aa)
	C3Y0K7_BRAFL	Uncharacterized protein. (787 aa)
	C3Y134_BRAFL	BRO1 domain-containing protein. (874 aa)
	C3Y204_BRAFL	Uncharacterized protein. (596 aa)
	C3Y205_BRAFL	Uncharacterized protein. (454 aa)
	C3XPS5_BRAFL	Uncharacterized protein. (444 aa)
	C3Y2Y1_BRAFL	Uncharacterized protein. (483 aa)
	C3Y3I3_BRAFL	Uncharacterized protein. (1461 aa)
	C3Y6T6_BRAFL	Uncharacterized protein. (500 aa)
	C3Y719_BRAFL	Uncharacterized protein. (391 aa)
	C3Y7Q2_BRAFL	TPR_REGION domain-containing protein. (280 aa)
	C3Y9G8_BRAFL	WD_REPEATS_REGION domain-containing protein. (1402 aa)
	C3YA20_BRAFL	Protein kinase domain-containing protein. (689 aa)
	C3YAN4_BRAFL	MYND-type domain-containing protein. (427 aa)
	C3YCL4_BRAFL	Non-specific serine/threonine protein kinase. (492 aa)
	C3YDQ8_BRAFL	Mothers against decapentaplegic homolog. (559 aa)
	C3YEG9_BRAFL	Uncharacterized protein. (425 aa)
	C3YG01_BRAFL	Uncharacterized protein. (371 aa)
	C3YGU5_BRAFL	LRRCT domain-containing protein. (878 aa)
	C3YI17_BRAFL	Uncharacterized protein. (819 aa)
	C3YIM0_BRAFL	ALMS_motif domain-containing protein. (2857 aa)
	C3YIV6_BRAFL	Uncharacterized protein. (222 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPY9_BRAFL	C3ZNT2_BRAFL	C3XPY9	C3ZNT2	Protein kinase domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.706
C3XQF6_BRAFL	C3XQF7_BRAFL	C3XQF6	C3XQF7	Uncharacterized protein.	Uncharacterized protein.	0.952
C3XQF6_BRAFL	C3XQF8_BRAFL	C3XQF6	C3XQF8	Uncharacterized protein.	Uncharacterized protein.	0.540
C3XQF7_BRAFL	C3XQF6_BRAFL	C3XQF7	C3XQF6	Uncharacterized protein.	Uncharacterized protein.	0.952
C3XQF7_BRAFL	C3XQF8_BRAFL	C3XQF7	C3XQF8	Uncharacterized protein.	Uncharacterized protein.	0.548
C3XQF8_BRAFL	C3XQF6_BRAFL	C3XQF8	C3XQF6	Uncharacterized protein.	Uncharacterized protein.	0.540
C3XQF8_BRAFL	C3XQF7_BRAFL	C3XQF8	C3XQF7	Uncharacterized protein.	Uncharacterized protein.	0.548
C3XSS2_BRAFL	C3YM28_BRAFL	C3XSS2	C3YM28	PX domain-containing protein.	PX domain-containing protein.	0.976
C3XTH3_BRAFL	C3Y134_BRAFL	C3XTH3	C3Y134	Uncharacterized protein.	BRO1 domain-containing protein.	0.485
C3XTH3_BRAFL	C3Y2Y1_BRAFL	C3XTH3	C3Y2Y1	Uncharacterized protein.	Uncharacterized protein.	0.746
C3XTH3_BRAFL	C3YG01_BRAFL	C3XTH3	C3YG01	Uncharacterized protein.	Uncharacterized protein.	0.746
C3XTH3_BRAFL	C3YIV6_BRAFL	C3XTH3	C3YIV6	Uncharacterized protein.	Uncharacterized protein.	0.904
C3XTH3_BRAFL	C3Z6I7_BRAFL	C3XTH3	C3Z6I7	Uncharacterized protein.	UEV domain-containing protein.	0.746
C3XTH3_BRAFL	C3Z6I8_BRAFL	C3XTH3	C3Z6I8	Uncharacterized protein.	UEV domain-containing protein.	0.746
C3XTH3_BRAFL	C3ZUX5_BRAFL	C3XTH3	C3ZUX5	Uncharacterized protein.	UEV domain-containing protein.	0.746
C3XUA0_BRAFL	C3YRQ9_BRAFL	C3XUA0	C3YRQ9	CEP76-C2 domain-containing protein.	POLO box domain-containing protein.	0.572
C3XUA0_BRAFL	C3Z7E5_BRAFL	C3XUA0	C3Z7E5	CEP76-C2 domain-containing protein.	Uncharacterized protein.	0.605
C3XUA0_BRAFL	C3ZZX0_BRAFL	C3XUA0	C3ZZX0	CEP76-C2 domain-containing protein.	Protein kinase domain-containing protein.	0.548
C3XUA0_BRAFL	C4A0Y8_BRAFL	C3XUA0	C4A0Y8	CEP76-C2 domain-containing protein.	Uncharacterized protein.	0.572
C3Y0K5_BRAFL	C3Y0K6_BRAFL	C3Y0K5	C3Y0K6	RAB3GAP2_N domain-containing protein.	Uncharacterized protein.	0.508