(54 nodes) Positive regulation of mRNA metabolic process network (Branchiostoma floridae)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

Your Input:
	C3Y3B0_BRAFL	Endo/exonuclease/phosphatase domain-containing protein. (429 aa)
	C3XPH0_BRAFL	Uncharacterized protein. (365 aa)
	C3XPP5_BRAFL	Uncharacterized protein. (321 aa)
	C3XPP6_BRAFL	Uncharacterized protein. (152 aa)
	C3XPX8_BRAFL	RPOL4c domain-containing protein. (142 aa)
	C3XQU2_BRAFL	SKIP_SNW domain-containing protein. (543 aa)
	C3XU17_BRAFL	Uncharacterized protein. (291 aa)
	C3XU94_BRAFL	TPR_REGION domain-containing protein. (423 aa)
	C3XVT6_BRAFL	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; Belongs to the methyltransferase superfamily. METTL16/RlmF family. (471 aa)
	C3XW58_BRAFL	Uncharacterized protein. (288 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (760 aa)
	C3XWA2_BRAFL	Peptidase S59 domain-containing protein. (1834 aa)
	C3XYF0_BRAFL	RNB domain-containing protein; Belongs to the RNR ribonuclease family. (813 aa)
	C3XZ12_BRAFL	SAM domain-containing protein. (688 aa)
	C3Y458_BRAFL	DNA_mis_repair domain-containing protein. (717 aa)
	C3Y7T7_BRAFL	RRM domain-containing protein. (187 aa)
	C3Y7T8_BRAFL	RRM domain-containing protein. (183 aa)
	C3YC21_BRAFL	RRM domain-containing protein. (560 aa)
	C3YC79_BRAFL	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (1387 aa)
	C3YC97_BRAFL	RNA_bind domain-containing protein. (490 aa)
	C3YCP5_BRAFL	Uncharacterized protein. (1057 aa)
	C3YEG1_BRAFL	Endo/exonuclease/phosphatase domain-containing protein. (566 aa)
	C3YFD7_BRAFL	Uncharacterized protein; Belongs to the MT-A70-like family. (568 aa)
	C3YFU8_BRAFL	Uncharacterized protein; Belongs to the MT-A70-like family. (164 aa)
	C3YG12_BRAFL	PAT1 domain-containing protein. (1191 aa)
	C3YIW3_BRAFL	Uncharacterized protein. (356 aa)
	C3YKW9_BRAFL	Endo/exonuclease/phosphatase domain-containing protein. (554 aa)
	C3YM54_BRAFL	KH_dom_type_1 domain-containing protein. (186 aa)
	C3YN74_BRAFL	Uncharacterized protein. (428 aa)
	C3YQF0_BRAFL	YTH domain-containing protein. (559 aa)
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1288 aa)
	C3YVN0_BRAFL	Uncharacterized protein. (511 aa)
	C3YWD4_BRAFL	Not3 domain-containing protein. (398 aa)
	C3YWD5_BRAFL	NOT2_3_5 domain-containing protein. (286 aa)
	C3YZU4_BRAFL	Uncharacterized protein. (444 aa)
	C3Z2F7_BRAFL	S1 motif domain-containing protein. (723 aa)
	C3Z6B1_BRAFL	Nudix hydrolase domain-containing protein. (596 aa)
	C3Z7Q9_BRAFL	NOT2_3_5 domain-containing protein. (714 aa)
	C3ZB64_BRAFL	Uncharacterized protein. (136 aa)
	C3ZB66_BRAFL	Uncharacterized protein. (135 aa)
	C3ZB90_BRAFL	Uncharacterized protein. (1629 aa)
	C3ZB91_BRAFL	CNOT1_HEAT domain-containing protein. (918 aa)
	C3ZEK3_BRAFL	RRM domain-containing protein. (88 aa)
	C3ZG24_BRAFL	Uncharacterized protein. (536 aa)
	C3ZIA7_BRAFL	Helicase C-terminal domain-containing protein. (118 aa)
	C3ZJT1_BRAFL	UBA domain-containing protein. (1431 aa)
	C3ZLS8_BRAFL	Uncharacterized protein. (219 aa)
	C3ZQZ0_BRAFL	Uncharacterized protein. (172 aa)
	C3ZTA6_BRAFL	S1 motif domain-containing protein. (279 aa)
	C3ZTE3_BRAFL	Uncharacterized protein. (1290 aa)
	C3ZTI1_BRAFL	Uncharacterized protein. (487 aa)
	C3ZVZ7_BRAFL	CCHC-type domain-containing protein. (187 aa)
	C3ZVZ9_BRAFL	Uncharacterized protein. (105 aa)
	C3ZYQ0_BRAFL	Endo/exonuclease/phosphatase domain-containing protein. (370 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPH0_BRAFL	C3XQU2_BRAFL	C3XPH0	C3XQU2	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.890
C3XPH0_BRAFL	C3YC21_BRAFL	C3XPH0	C3YC21	Uncharacterized protein.	RRM domain-containing protein.	0.452
C3XPH0_BRAFL	C3YVN0_BRAFL	C3XPH0	C3YVN0	Uncharacterized protein.	Uncharacterized protein.	0.914
C3XPH0_BRAFL	C3ZIA7_BRAFL	C3XPH0	C3ZIA7	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.410
C3XPP5_BRAFL	C3XW58_BRAFL	C3XPP5	C3XW58	Uncharacterized protein.	Uncharacterized protein.	0.591
C3XPP5_BRAFL	C3Y7T7_BRAFL	C3XPP5	C3Y7T7	Uncharacterized protein.	RRM domain-containing protein.	0.472
C3XPP5_BRAFL	C3Y7T8_BRAFL	C3XPP5	C3Y7T8	Uncharacterized protein.	RRM domain-containing protein.	0.434
C3XPP5_BRAFL	C3YN74_BRAFL	C3XPP5	C3YN74	Uncharacterized protein.	Uncharacterized protein.	0.548
C3XPP5_BRAFL	C3Z7Q9_BRAFL	C3XPP5	C3Z7Q9	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.408
C3XPP5_BRAFL	C3ZB90_BRAFL	C3XPP5	C3ZB90	Uncharacterized protein.	Uncharacterized protein.	0.411
C3XPP5_BRAFL	C3ZB91_BRAFL	C3XPP5	C3ZB91	Uncharacterized protein.	CNOT1_HEAT domain-containing protein.	0.411
C3XPP5_BRAFL	C3ZEK3_BRAFL	C3XPP5	C3ZEK3	Uncharacterized protein.	RRM domain-containing protein.	0.699
C3XPP5_BRAFL	PAN2	C3XPP5	C3YSK7	Uncharacterized protein.	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...]	0.764
C3XPP5_BRAFL	PAN3	C3XPP5	C3XW74	Uncharacterized protein.	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...]	0.836
C3XPP6_BRAFL	C3XW58_BRAFL	C3XPP6	C3XW58	Uncharacterized protein.	Uncharacterized protein.	0.591
C3XPP6_BRAFL	C3Y7T7_BRAFL	C3XPP6	C3Y7T7	Uncharacterized protein.	RRM domain-containing protein.	0.684
C3XPP6_BRAFL	C3Y7T8_BRAFL	C3XPP6	C3Y7T8	Uncharacterized protein.	RRM domain-containing protein.	0.459
C3XPP6_BRAFL	C3YN74_BRAFL	C3XPP6	C3YN74	Uncharacterized protein.	Uncharacterized protein.	0.548
C3XPP6_BRAFL	C3Z7Q9_BRAFL	C3XPP6	C3Z7Q9	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.408
C3XPP6_BRAFL	C3ZB90_BRAFL	C3XPP6	C3ZB90	Uncharacterized protein.	Uncharacterized protein.	0.411