(14 nodes) Regulation of stem cell population maintenance network (Branchiostoma floridae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZKZ0_BRAFL	Uncharacterized protein. (255 aa)
	C3ZTW1_BRAFL	Smoothend-like protein protein; Belongs to the G-protein coupled receptor Fz/Smo family. (1250 aa)
	C3ZNA6_BRAFL	Uncharacterized protein. (294 aa)
	C3XZJ1_BRAFL	Uncharacterized protein. (409 aa)
	C3Y235_BRAFL	BHLH domain-containing protein. (369 aa)
	C3Y5W2_BRAFL	Uncharacterized protein. (1035 aa)
	C3YGP3_BRAFL	WD_REPEATS_REGION domain-containing protein. (657 aa)
	C3YMS3_BRAFL	4F5 domain-containing protein. (76 aa)
	C3YWD4_BRAFL	Not3 domain-containing protein. (398 aa)
	C3YWD5_BRAFL	NOT2_3_5 domain-containing protein. (286 aa)
	C3Z4S1_BRAFL	TAF domain-containing protein. (444 aa)
	C3Z7Q9_BRAFL	NOT2_3_5 domain-containing protein. (714 aa)
	C3Z937_BRAFL	Uncharacterized protein. (111 aa)
	C3ZE98_BRAFL	C3H1-type domain-containing protein. (1736 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3YWD4_BRAFL	C3YWD5_BRAFL	C3YWD4	C3YWD5	Not3 domain-containing protein.	NOT2_3_5 domain-containing protein.	0.967
C3YWD4_BRAFL	C3Z7Q9_BRAFL	C3YWD4	C3Z7Q9	Not3 domain-containing protein.	NOT2_3_5 domain-containing protein.	0.986
C3YWD5_BRAFL	C3YWD4_BRAFL	C3YWD5	C3YWD4	NOT2_3_5 domain-containing protein.	Not3 domain-containing protein.	0.967
C3YWD5_BRAFL	C3Z7Q9_BRAFL	C3YWD5	C3Z7Q9	NOT2_3_5 domain-containing protein.	NOT2_3_5 domain-containing protein.	0.986
C3Z7Q9_BRAFL	C3YWD4_BRAFL	C3Z7Q9	C3YWD4	NOT2_3_5 domain-containing protein.	Not3 domain-containing protein.	0.986
C3Z7Q9_BRAFL	C3YWD5_BRAFL	C3Z7Q9	C3YWD5	NOT2_3_5 domain-containing protein.	NOT2_3_5 domain-containing protein.	0.986