(22 nodes) Regulation of autophagosome assembly network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPY9_BRAFL	Protein kinase domain-containing protein. (347 aa)
	C3XSS2_BRAFL	PX domain-containing protein. (402 aa)
	C3XW25_BRAFL	Uncharacterized protein. (422 aa)
	C3XZ65_BRAFL	Uncharacterized protein. (350 aa)
	C3Y0K5_BRAFL	RAB3GAP2_N domain-containing protein. (262 aa)
	C3Y0K6_BRAFL	Uncharacterized protein. (149 aa)
	C3Y0K7_BRAFL	Uncharacterized protein. (787 aa)
	C3YI17_BRAFL	Uncharacterized protein. (819 aa)
	C3YM28_BRAFL	PX domain-containing protein. (428 aa)
	C3YR64_BRAFL	Rab-GAP TBC domain-containing protein. (133 aa)
	C3YR68_BRAFL	Rab-GAP TBC domain-containing protein. (473 aa)
	C3YW45_BRAFL	PIPK domain-containing protein. (408 aa)
	C3YW82_BRAFL	Rab-GAP TBC domain-containing protein. (341 aa)
	C3YX97_BRAFL	UDENN FLCN/SMCR8-type domain-containing protein. (996 aa)
	C3YYJ0_BRAFL	Uncharacterized protein. (2116 aa)
	C3Z095_BRAFL	Uncharacterized protein. (959 aa)
	C3ZAH8_BRAFL	Uncharacterized protein. (2208 aa)
	C3ZAI0_BRAFL	Uncharacterized protein. (206 aa)
	C3ZAI1_BRAFL	Uncharacterized protein. (181 aa)
	C3ZHY5_BRAFL	SAM domain-containing protein. (438 aa)
	C3ZLD5_BRAFL	Uncharacterized protein. (2668 aa)
	C3ZXF0_BRAFL	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (642 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XSS2_BRAFL	C3YM28_BRAFL	C3XSS2	C3YM28	PX domain-containing protein.	PX domain-containing protein.	0.976
C3Y0K5_BRAFL	C3Y0K6_BRAFL	C3Y0K5	C3Y0K6	RAB3GAP2_N domain-containing protein.	Uncharacterized protein.	0.508
C3Y0K5_BRAFL	C3Y0K7_BRAFL	C3Y0K5	C3Y0K7	RAB3GAP2_N domain-containing protein.	Uncharacterized protein.	0.942
C3Y0K5_BRAFL	C3Z095_BRAFL	C3Y0K5	C3Z095	RAB3GAP2_N domain-containing protein.	Uncharacterized protein.	0.971
C3Y0K6_BRAFL	C3Y0K5_BRAFL	C3Y0K6	C3Y0K5	Uncharacterized protein.	RAB3GAP2_N domain-containing protein.	0.508
C3Y0K6_BRAFL	C3Y0K7_BRAFL	C3Y0K6	C3Y0K7	Uncharacterized protein.	Uncharacterized protein.	0.458
C3Y0K6_BRAFL	C3Z095_BRAFL	C3Y0K6	C3Z095	Uncharacterized protein.	Uncharacterized protein.	0.971
C3Y0K7_BRAFL	C3Y0K5_BRAFL	C3Y0K7	C3Y0K5	Uncharacterized protein.	RAB3GAP2_N domain-containing protein.	0.942
C3Y0K7_BRAFL	C3Y0K6_BRAFL	C3Y0K7	C3Y0K6	Uncharacterized protein.	Uncharacterized protein.	0.458
C3Y0K7_BRAFL	C3Z095_BRAFL	C3Y0K7	C3Z095	Uncharacterized protein.	Uncharacterized protein.	0.971
C3YM28_BRAFL	C3XSS2_BRAFL	C3YM28	C3XSS2	PX domain-containing protein.	PX domain-containing protein.	0.976
C3YR64_BRAFL	C3YR68_BRAFL	C3YR64	C3YR68	Rab-GAP TBC domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.933
C3YR68_BRAFL	C3YR64_BRAFL	C3YR68	C3YR64	Rab-GAP TBC domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.933
C3Z095_BRAFL	C3Y0K5_BRAFL	C3Z095	C3Y0K5	Uncharacterized protein.	RAB3GAP2_N domain-containing protein.	0.971
C3Z095_BRAFL	C3Y0K6_BRAFL	C3Z095	C3Y0K6	Uncharacterized protein.	Uncharacterized protein.	0.971
C3Z095_BRAFL	C3Y0K7_BRAFL	C3Z095	C3Y0K7	Uncharacterized protein.	Uncharacterized protein.	0.971