(31 nodes) Positive regulation of double-strand break repair via nonhomologous end joining network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZF60_BRAFL	WD_REPEATS_REGION domain-containing protein. (434 aa)
	C3Y076_BRAFL	Uncharacterized protein. (467 aa)
	C3Y3I9_BRAFL	RING-type domain-containing protein. (180 aa)
	C3Y3J1_BRAFL	RING-type domain-containing protein. (180 aa)
	C3Y3J4_BRAFL	RING-type domain-containing protein. (198 aa)
	C3Y416_BRAFL	DTC domain-containing protein. (154 aa)
	C3Y547_BRAFL	SET domain-containing protein. (312 aa)
	C3Y5Q2_BRAFL	Uncharacterized protein. (1122 aa)
	C3Y5W8_BRAFL	Uncharacterized protein. (635 aa)
	C3Y5X0_BRAFL	Macro domain-containing protein. (970 aa)
	C3Y8U1_BRAFL	RING-type domain-containing protein. (178 aa)
	C3YF62_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (311 aa)
	C3YF64_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (4388 aa)
	C3YF65_BRAFL	Uncharacterized protein. (488 aa)
	C3YG90_BRAFL	FHA_2 domain-containing protein. (633 aa)
	C3YRW4_BRAFL	RING-type domain-containing protein. (190 aa)
	C3YRW5_BRAFL	DTC domain-containing protein. (153 aa)
	C3YRW8_BRAFL	DTC domain-containing protein. (168 aa)
	C3YRX1_BRAFL	DTC domain-containing protein. (152 aa)
	C3YRX3_BRAFL	DTC domain-containing protein. (141 aa)
	C3YRX9_BRAFL	DTC domain-containing protein. (181 aa)
	C3YS05_BRAFL	RING-type domain-containing protein. (188 aa)
	C3YS13_BRAFL	RING-type domain-containing protein. (191 aa)
	C3YS35_BRAFL	RING-type domain-containing protein. (193 aa)
	C3YT49_BRAFL	Uncharacterized protein. (471 aa)
	C3YUP5_BRAFL	RING-type domain-containing protein. (184 aa)
	C3YV86_BRAFL	Uncharacterized protein. (269 aa)
	C3Z272_BRAFL	Uncharacterized protein. (725 aa)
	C3Z273_BRAFL	SMC hinge domain-containing protein. (1148 aa)
	C3Z2P3_BRAFL	Poly [ADP-ribose] polymerase. (516 aa)
	C3ZS16_BRAFL	SMC hinge domain-containing protein. (1932 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3YF62_BRAFL	C3YF64_BRAFL	C3YF62	C3YF64	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.947
C3YF62_BRAFL	C3YF65_BRAFL	C3YF62	C3YF65	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.934
C3YF64_BRAFL	C3YF62_BRAFL	C3YF64	C3YF62	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.947
C3YF64_BRAFL	C3YF65_BRAFL	C3YF64	C3YF65	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.942
C3YF65_BRAFL	C3YF62_BRAFL	C3YF65	C3YF62	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.934
C3YF65_BRAFL	C3YF64_BRAFL	C3YF65	C3YF64	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.942
C3YRW4_BRAFL	C3YRW5_BRAFL	C3YRW4	C3YRW5	RING-type domain-containing protein.	DTC domain-containing protein.	0.902
C3YRW4_BRAFL	C3YS35_BRAFL	C3YRW4	C3YS35	RING-type domain-containing protein.	RING-type domain-containing protein.	0.902
C3YRW5_BRAFL	C3YRW4_BRAFL	C3YRW5	C3YRW4	DTC domain-containing protein.	RING-type domain-containing protein.	0.902
C3YRW5_BRAFL	C3YS35_BRAFL	C3YRW5	C3YS35	DTC domain-containing protein.	RING-type domain-containing protein.	0.903
C3YS35_BRAFL	C3YRW4_BRAFL	C3YS35	C3YRW4	RING-type domain-containing protein.	RING-type domain-containing protein.	0.902
C3YS35_BRAFL	C3YRW5_BRAFL	C3YS35	C3YRW5	RING-type domain-containing protein.	DTC domain-containing protein.	0.903
C3Z272_BRAFL	C3Z273_BRAFL	C3Z272	C3Z273	Uncharacterized protein.	SMC hinge domain-containing protein.	0.945
C3Z273_BRAFL	C3Z272_BRAFL	C3Z273	C3Z272	SMC hinge domain-containing protein.	Uncharacterized protein.	0.945