(34 nodes) Kinetochore network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YH88_BRAFL	Uncharacterized protein. (340 aa)
	C3XU84_BRAFL	Uncharacterized protein. (355 aa)
	C3XUK5_BRAFL	GFA domain-containing protein. (119 aa)
	C3XYZ5_BRAFL	Protein kinase domain-containing protein. (211 aa)
	C3XYZ6_BRAFL	BUB1 N-terminal domain-containing protein. (234 aa)
	C3Y068_BRAFL	G-patch domain-containing protein. (264 aa)
	C3Y0D1_BRAFL	CENP-F_N domain-containing protein. (130 aa)
	C3Y0I8_BRAFL	Protein kinase domain-containing protein. (460 aa)
	C3Y184_BRAFL	Uncharacterized protein. (168 aa)
	C3Y238_BRAFL	Uncharacterized protein. (158 aa)
	C3Y528_BRAFL	Uncharacterized protein. (1907 aa)
	C3YDK9_BRAFL	Uncharacterized protein. (100 aa)
	C3YG44_BRAFL	Uncharacterized protein. (263 aa)
	C3YH55_BRAFL	Uncharacterized protein. (579 aa)
	C3XTY8_BRAFL	Uncharacterized protein. (581 aa)
	C3YII8_BRAFL	CENP-C_C domain-containing protein. (1118 aa)
	C3YVM5_BRAFL	CENP-H domain-containing protein. (238 aa)
	C3YW70_BRAFL	Uncharacterized protein. (306 aa)
	C3Z3N5_BRAFL	Spc7 domain-containing protein. (1713 aa)
	C3Z7T2_BRAFL	Uncharacterized protein. (174 aa)
	C3ZCQ6_BRAFL	Uncharacterized protein. (225 aa)
	C3ZE81_BRAFL	Uncharacterized protein. (517 aa)
	C3ZEC0_BRAFL	PID domain-containing protein. (263 aa)
	C3ZHM8_BRAFL	Uncharacterized protein. (252 aa)
	C3ZIT4_BRAFL	Gly_acyl_tr_C domain-containing protein. (108 aa)
	C3ZJT9_BRAFL	Uncharacterized protein. (109 aa)
	C3ZKE5_BRAFL	FR47 domain-containing protein. (148 aa)
	C3ZQJ9_BRAFL	Uncharacterized protein. (707 aa)
	C3ZRG1_BRAFL	F-box domain-containing protein. (195 aa)
	C3ZUN4_BRAFL	CCHC-type domain-containing protein. (583 aa)
	C3ZXT7_BRAFL	Uncharacterized protein. (572 aa)
	C3XRW7_BRAFL	Uncharacterized protein. (1231 aa)
	C3XR16_BRAFL	N-acetyltransferase domain-containing protein. (288 aa)
	C3XQJ4_BRAFL	F-box domain-containing protein. (195 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRW7_BRAFL	C3XYZ5_BRAFL	C3XRW7	C3XYZ5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.810
C3XRW7_BRAFL	C3XYZ6_BRAFL	C3XRW7	C3XYZ6	Uncharacterized protein.	BUB1 N-terminal domain-containing protein.	0.855
C3XRW7_BRAFL	C3Y0D1_BRAFL	C3XRW7	C3Y0D1	Uncharacterized protein.	CENP-F_N domain-containing protein.	0.650
C3XRW7_BRAFL	C3Y0I8_BRAFL	C3XRW7	C3Y0I8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.475
C3XRW7_BRAFL	C3YH55_BRAFL	C3XRW7	C3YH55	Uncharacterized protein.	Uncharacterized protein.	0.655
C3XRW7_BRAFL	C3YW70_BRAFL	C3XRW7	C3YW70	Uncharacterized protein.	Uncharacterized protein.	0.556
C3XRW7_BRAFL	C3ZE81_BRAFL	C3XRW7	C3ZE81	Uncharacterized protein.	Uncharacterized protein.	0.440
C3XRW7_BRAFL	C3ZJT9_BRAFL	C3XRW7	C3ZJT9	Uncharacterized protein.	Uncharacterized protein.	0.449
C3XRW7_BRAFL	C3ZQJ9_BRAFL	C3XRW7	C3ZQJ9	Uncharacterized protein.	Uncharacterized protein.	0.998
C3XU84_BRAFL	C3XYZ5_BRAFL	C3XU84	C3XYZ5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.716
C3XU84_BRAFL	C3XYZ6_BRAFL	C3XU84	C3XYZ6	Uncharacterized protein.	BUB1 N-terminal domain-containing protein.	0.851
C3XU84_BRAFL	C3YG44_BRAFL	C3XU84	C3YG44	Uncharacterized protein.	Uncharacterized protein.	0.562
C3XU84_BRAFL	C3YH55_BRAFL	C3XU84	C3YH55	Uncharacterized protein.	Uncharacterized protein.	0.740
C3XU84_BRAFL	C3YII8_BRAFL	C3XU84	C3YII8	Uncharacterized protein.	CENP-C_C domain-containing protein.	0.971
C3XU84_BRAFL	C3Z3N5_BRAFL	C3XU84	C3Z3N5	Uncharacterized protein.	Spc7 domain-containing protein.	0.553
C3XU84_BRAFL	C3ZE81_BRAFL	C3XU84	C3ZE81	Uncharacterized protein.	Uncharacterized protein.	0.992
C3XU84_BRAFL	C3ZHM8_BRAFL	C3XU84	C3ZHM8	Uncharacterized protein.	Uncharacterized protein.	0.468
C3XU84_BRAFL	C3ZJT9_BRAFL	C3XU84	C3ZJT9	Uncharacterized protein.	Uncharacterized protein.	0.790
C3XYZ5_BRAFL	C3XRW7_BRAFL	C3XYZ5	C3XRW7	Protein kinase domain-containing protein.	Uncharacterized protein.	0.810
C3XYZ5_BRAFL	C3XU84_BRAFL	C3XYZ5	C3XU84	Protein kinase domain-containing protein.	Uncharacterized protein.	0.716