(23 nodes) Inclusion body network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y9I2_BRAFL	Uncharacterized protein. (1831 aa)
	C3YD55_BRAFL	Uncharacterized protein. (290 aa)
	C3YDF6_BRAFL	ANK_REP_REGION domain-containing protein. (91 aa)
	C3Y0I9_BRAFL	Josephin domain-containing protein. (381 aa)
	C3YPX4_BRAFL	Aminotran_1_2 domain-containing protein. (449 aa)
	C3YXY3_BRAFL	Uncharacterized protein. (377 aa)
	C3Z7V4_BRAFL	Uncharacterized protein. (2767 aa)
	C3Z9P1_BRAFL	RING-type domain-containing protein. (316 aa)
	C3ZB59_BRAFL	Uncharacterized protein. (148 aa)
	C3ZB60_BRAFL	Ubiquitin-like domain-containing protein. (558 aa)
	C3ZBX2_BRAFL	RRM domain-containing protein. (166 aa)
	C3ZGJ8_BRAFL	Uncharacterized protein. (363 aa)
	C3ZGJ9_BRAFL	Uncharacterized protein. (3187 aa)
	C3ZGQ7_BRAFL	RBR-type E3 ubiquitin transferase. (486 aa)
	C3ZIE9_BRAFL	Uncharacterized protein. (431 aa)
	C3ZIF0_BRAFL	Uncharacterized protein. (165 aa)
	C3ZRY1_BRAFL	Uncharacterized protein. (169 aa)
	C3ZRY3_BRAFL	BACK domain-containing protein. (348 aa)
	C3ZV95_BRAFL	RRM domain-containing protein. (100 aa)
	C3XQC2_BRAFL	PI31_Prot_N domain-containing protein. (636 aa)
	C3XXF8_BRAFL	Uncharacterized protein. (554 aa)
	C3Y1B7_BRAFL	Uncharacterized protein. (1507 aa)
	C3YD54_BRAFL	Uncharacterized protein. (239 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XXF8_BRAFL	C3ZGJ8_BRAFL	C3XXF8	C3ZGJ8	Uncharacterized protein.	Uncharacterized protein.	0.531
C3XXF8_BRAFL	C3ZGJ9_BRAFL	C3XXF8	C3ZGJ9	Uncharacterized protein.	Uncharacterized protein.	0.531
C3Y0I9_BRAFL	C3Y9I2_BRAFL	C3Y0I9	C3Y9I2	Josephin domain-containing protein.	Uncharacterized protein.	0.688
C3Y0I9_BRAFL	C3ZGJ8_BRAFL	C3Y0I9	C3ZGJ8	Josephin domain-containing protein.	Uncharacterized protein.	0.459
C3Y0I9_BRAFL	C3ZGJ9_BRAFL	C3Y0I9	C3ZGJ9	Josephin domain-containing protein.	Uncharacterized protein.	0.459
C3Y9I2_BRAFL	C3Y0I9_BRAFL	C3Y9I2	C3Y0I9	Uncharacterized protein.	Josephin domain-containing protein.	0.688
C3ZGJ8_BRAFL	C3XXF8_BRAFL	C3ZGJ8	C3XXF8	Uncharacterized protein.	Uncharacterized protein.	0.531
C3ZGJ8_BRAFL	C3Y0I9_BRAFL	C3ZGJ8	C3Y0I9	Uncharacterized protein.	Josephin domain-containing protein.	0.459
C3ZGJ8_BRAFL	C3ZGJ9_BRAFL	C3ZGJ8	C3ZGJ9	Uncharacterized protein.	Uncharacterized protein.	0.943
C3ZGJ9_BRAFL	C3XXF8_BRAFL	C3ZGJ9	C3XXF8	Uncharacterized protein.	Uncharacterized protein.	0.531
C3ZGJ9_BRAFL	C3Y0I9_BRAFL	C3ZGJ9	C3Y0I9	Uncharacterized protein.	Josephin domain-containing protein.	0.459
C3ZGJ9_BRAFL	C3ZGJ8_BRAFL	C3ZGJ9	C3ZGJ8	Uncharacterized protein.	Uncharacterized protein.	0.943