(75 nodes) Transport vesicle network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YTS2_BRAFL	Uncharacterized protein. (228 aa)
	C3YP64_BRAFL	Uncharacterized protein. (108 aa)
	C3YP49_BRAFL	Uncharacterized protein. (552 aa)
	C3YP48_BRAFL	Uncharacterized protein. (483 aa)
	C3YP47_BRAFL	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (552 aa)
	C3YP46_BRAFL	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (183 aa)
	C3YP45_BRAFL	Uncharacterized protein. (1159 aa)
	C3YNA9_BRAFL	MARVEL domain-containing protein. (206 aa)
	C3YMM3_BRAFL	Methyltransf_25 domain-containing protein. (264 aa)
	C3YL72_BRAFL	WD_REPEATS_REGION domain-containing protein. (1113 aa)
	C3YL05_BRAFL	Uncharacterized protein. (806 aa)
	C3YJK2_BRAFL	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (268 aa)
	C3YJA1_BRAFL	Uncharacterized protein. (274 aa)
	C3YTS3_BRAFL	Uncharacterized protein. (278 aa)
	C3YGT9_BRAFL	Uncharacterized protein. (887 aa)
	C3YEQ5_BRAFL	WD_REPEATS_REGION domain-containing protein. (419 aa)
	C3YDP4_BRAFL	Uncharacterized protein. (376 aa)
	C3YDP3_BRAFL	MFS domain-containing protein. (241 aa)
	C3YCC3_BRAFL	Uncharacterized protein. (218 aa)
	C3YBS7_BRAFL	Laminin EGF-like domain-containing protein. (432 aa)
	C3YAR8_BRAFL	Uncharacterized protein. (305 aa)
	C3YAR7_BRAFL	Uncharacterized protein. (270 aa)
	C3Y7P8_BRAFL	Sec2p domain-containing protein. (332 aa)
	C3Y6Y8_BRAFL	Methyltranfer_dom domain-containing protein. (262 aa)
	C3Y562_BRAFL	Ras-associating domain-containing protein. (457 aa)
	C3Y520_BRAFL	Uncharacterized protein. (213 aa)
	C3Y518_BRAFL	MFS domain-containing protein. (615 aa)
	C3Y1T3_BRAFL	AB hydrolase-1 domain-containing protein. (311 aa)
	C3Y0I1_BRAFL	Uncharacterized protein. (1805 aa)
	C3XZU6_BRAFL	Uncharacterized protein. (213 aa)
	C3XZI4_BRAFL	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (782 aa)
	C3XZH6_BRAFL	Uncharacterized protein. (265 aa)
	C3XTX1_BRAFL	Uncharacterized protein. (182 aa)
	C3XTT3_BRAFL	AP-1 complex subunit gamma. (846 aa)
	C3XTP9_BRAFL	Uncharacterized protein. (302 aa)
	C3XS18_BRAFL	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (571 aa)
	C3XPI9_BRAFL	HSac2 domain-containing protein. (209 aa)
	C3YTW0_BRAFL	Uncharacterized protein. (132 aa)
	C3YVL3_BRAFL	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (318 aa)
	RdhF	SSD domain-containing protein. (764 aa)
	C3Z1K6_BRAFL	MFS domain-containing protein. (402 aa)
	C3Z3J5_BRAFL	Uncharacterized protein. (192 aa)
	C3Z4L5_BRAFL	MFS domain-containing protein. (461 aa)
	C3Z5Q7_BRAFL	Uncharacterized protein. (87 aa)
	C3Z6K0_BRAFL	Uncharacterized protein. (269 aa)
	C3Z9K2_BRAFL	Methyltransf_25 domain-containing protein. (527 aa)
	C3ZA91_BRAFL	Uncharacterized protein. (398 aa)
	C3ZAP3_BRAFL	ATP-grasp domain-containing protein. (393 aa)
	C3ZB24_BRAFL	Uncharacterized protein. (177 aa)
	C3ZB25_BRAFL	Uncharacterized protein. (129 aa)
	C3ZCW0_BRAFL	Uncharacterized protein. (298 aa)
	C3ZD41_BRAFL	Uncharacterized protein. (180 aa)
	C3ZD42_BRAFL	Uncharacterized protein. (971 aa)
	C3ZFP9_BRAFL	TPR_REGION domain-containing protein. (251 aa)
	C3ZG74_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (232 aa)
	C3ZHD7_BRAFL	Methyltransf_25 domain-containing protein. (302 aa)
	C3ZJE4_BRAFL	Uncharacterized protein. (209 aa)
	C3ZKL3_BRAFL	Uncharacterized protein. (165 aa)
	C3ZKL4_BRAFL	Uncharacterized protein. (301 aa)
	C3ZMU5_BRAFL	Clathrin_bdg domain-containing protein. (894 aa)
	C3ZNT3_BRAFL	PDZ domain-containing protein. (660 aa)
	C3ZQD7_BRAFL	Uncharacterized protein. (125 aa)
	C3ZQD8_BRAFL	Uncharacterized protein. (141 aa)
	C3ZSM9_BRAFL	Uncharacterized protein. (162 aa)
	C3ZSR3_BRAFL	Uncharacterized protein. (170 aa)
	C3ZTB7_BRAFL	Uncharacterized protein. (1373 aa)
	C3ZTX8_BRAFL	VWFA domain-containing protein. (948 aa)
	C3ZU79_BRAFL	MFS domain-containing protein. (606 aa)
	C3ZUV8_BRAFL	Uncharacterized protein. (199 aa)
	C3ZW32_BRAFL	Uncharacterized protein. (140 aa)
	C3ZW96_BRAFL	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (784 aa)
	C3ZXH8_BRAFL	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (730 aa)
	C3ZZ71_BRAFL	MFS domain-containing protein. (508 aa)
	C4A0E7_BRAFL	VWFA domain-containing protein. (650 aa)
	C4A0I6_BRAFL	MARVEL domain-containing protein. (259 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTP9_BRAFL	C3Z4L5_BRAFL	C3XTP9	C3Z4L5	Uncharacterized protein.	MFS domain-containing protein.	0.463
C3XTP9_BRAFL	C3ZAP3_BRAFL	C3XTP9	C3ZAP3	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.471
C3XTT3_BRAFL	C3Y0I1_BRAFL	C3XTT3	C3Y0I1	AP-1 complex subunit gamma.	Uncharacterized protein.	0.444
C3XTT3_BRAFL	C3YP45_BRAFL	C3XTT3	C3YP45	AP-1 complex subunit gamma.	Uncharacterized protein.	0.449
C3XTT3_BRAFL	C3Z4L5_BRAFL	C3XTT3	C3Z4L5	AP-1 complex subunit gamma.	MFS domain-containing protein.	0.633
C3XTT3_BRAFL	C3ZD41_BRAFL	C3XTT3	C3ZD41	AP-1 complex subunit gamma.	Uncharacterized protein.	0.783
C3XTT3_BRAFL	C3ZD42_BRAFL	C3XTT3	C3ZD42	AP-1 complex subunit gamma.	Uncharacterized protein.	0.783
C3XTT3_BRAFL	C3ZMU5_BRAFL	C3XTT3	C3ZMU5	AP-1 complex subunit gamma.	Clathrin_bdg domain-containing protein.	0.627
C3XTT3_BRAFL	C3ZTB7_BRAFL	C3XTT3	C3ZTB7	AP-1 complex subunit gamma.	Uncharacterized protein.	0.540
C3XTX1_BRAFL	C3YL72_BRAFL	C3XTX1	C3YL72	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.526
C3XTX1_BRAFL	C3ZSR3_BRAFL	C3XTX1	C3ZSR3	Uncharacterized protein.	Uncharacterized protein.	0.515
C3XZH6_BRAFL	C3Z4L5_BRAFL	C3XZH6	C3Z4L5	Uncharacterized protein.	MFS domain-containing protein.	0.606
C3XZH6_BRAFL	C3ZAP3_BRAFL	C3XZH6	C3ZAP3	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.623
C3XZH6_BRAFL	C3ZKL3_BRAFL	C3XZH6	C3ZKL3	Uncharacterized protein.	Uncharacterized protein.	0.444
C3XZH6_BRAFL	C3ZKL4_BRAFL	C3XZH6	C3ZKL4	Uncharacterized protein.	Uncharacterized protein.	0.444
C3XZI4_BRAFL	C3YL72_BRAFL	C3XZI4	C3YL72	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	WD_REPEATS_REGION domain-containing protein.	0.995
C3XZI4_BRAFL	C3YP45_BRAFL	C3XZI4	C3YP45	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.999
C3XZI4_BRAFL	C3YP46_BRAFL	C3XZI4	C3YP46	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.977
C3XZI4_BRAFL	C3YP47_BRAFL	C3XZI4	C3YP47	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.977
C3XZI4_BRAFL	C3YP48_BRAFL	C3XZI4	C3YP48	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.991