(25 nodes) Midbody network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XU20_BRAFL	Uncharacterized protein. (353 aa)
	C3XW83_BRAFL	MIT domain-containing protein. (653 aa)
	C3XWE6_BRAFL	MIT domain-containing protein. (246 aa)
	C3XX69_BRAFL	Helicase ATP-binding domain-containing protein. (692 aa)
	C3XXQ4_BRAFL	Uncharacterized protein. (845 aa)
	C3XZA3_BRAFL	DUF547 domain-containing protein. (1765 aa)
	C3XZA5_BRAFL	FYVE-type domain-containing protein. (1100 aa)
	C3XZL3_BRAFL	Uncharacterized protein. (4410 aa)
	C3XZL5_BRAFL	UBIQUITIN_CONJUGAT_2 domain-containing protein. (526 aa)
	C3Y0D1_BRAFL	CENP-F_N domain-containing protein. (130 aa)
	C3Y134_BRAFL	BRO1 domain-containing protein. (874 aa)
	C3Y2K5_BRAFL	ANK_REP_REGION domain-containing protein. (241 aa)
	C3Y5C7_BRAFL	Uncharacterized protein. (358 aa)
	C3YBE9_BRAFL	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1252 aa)
	C3YRB4_BRAFL	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (179 aa)
	C3YT25_BRAFL	Peptidase_M14 domain-containing protein. (591 aa)
	C3YTL9_BRAFL	Uncharacterized protein. (125 aa)
	C3Z1G2_BRAFL	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (2394 aa)
	C3Z1G3_BRAFL	Uncharacterized protein. (874 aa)
	C3Z3T3_BRAFL	Deacetylase sirtuin-type domain-containing protein. (325 aa)
	C3Z401_BRAFL	Uncharacterized protein. (2615 aa)
	C3ZCV4_BRAFL	Uncharacterized protein. (653 aa)
	C3ZIB9_BRAFL	Uncharacterized protein. (191 aa)
	C3ZJT9_BRAFL	Uncharacterized protein. (109 aa)
	C3ZLJ1_BRAFL	CS domain-containing protein. (333 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XU20_BRAFL	C3XW83_BRAFL	C3XU20	C3XW83	Uncharacterized protein.	MIT domain-containing protein.	0.922
C3XU20_BRAFL	C3XWE6_BRAFL	C3XU20	C3XWE6	Uncharacterized protein.	MIT domain-containing protein.	0.456
C3XU20_BRAFL	C3Y134_BRAFL	C3XU20	C3Y134	Uncharacterized protein.	BRO1 domain-containing protein.	0.736
C3XW83_BRAFL	C3XU20_BRAFL	C3XW83	C3XU20	MIT domain-containing protein.	Uncharacterized protein.	0.922
C3XWE6_BRAFL	C3XU20_BRAFL	C3XWE6	C3XU20	MIT domain-containing protein.	Uncharacterized protein.	0.456
C3XZA3_BRAFL	C3XZA5_BRAFL	C3XZA3	C3XZA5	DUF547 domain-containing protein.	FYVE-type domain-containing protein.	0.814
C3XZA5_BRAFL	C3XZA3_BRAFL	C3XZA5	C3XZA3	FYVE-type domain-containing protein.	DUF547 domain-containing protein.	0.814
C3XZL3_BRAFL	C3XZL5_BRAFL	C3XZL3	C3XZL5	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.964
C3XZL5_BRAFL	C3XZL3_BRAFL	C3XZL5	C3XZL3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.964
C3Y0D1_BRAFL	C3YBE9_BRAFL	C3Y0D1	C3YBE9	CENP-F_N domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.839
C3Y0D1_BRAFL	C3ZJT9_BRAFL	C3Y0D1	C3ZJT9	CENP-F_N domain-containing protein.	Uncharacterized protein.	0.805
C3Y0D1_BRAFL	C3ZLJ1_BRAFL	C3Y0D1	C3ZLJ1	CENP-F_N domain-containing protein.	CS domain-containing protein.	0.694
C3Y134_BRAFL	C3XU20_BRAFL	C3Y134	C3XU20	BRO1 domain-containing protein.	Uncharacterized protein.	0.736
C3YBE9_BRAFL	C3Y0D1_BRAFL	C3YBE9	C3Y0D1	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CENP-F_N domain-containing protein.	0.839
C3Z1G2_BRAFL	C3Z1G3_BRAFL	C3Z1G2	C3Z1G3	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.842
C3Z1G3_BRAFL	C3Z1G2_BRAFL	C3Z1G3	C3Z1G2	Uncharacterized protein.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.842
C3ZJT9_BRAFL	C3Y0D1_BRAFL	C3ZJT9	C3Y0D1	Uncharacterized protein.	CENP-F_N domain-containing protein.	0.805
C3ZJT9_BRAFL	C3ZLJ1_BRAFL	C3ZJT9	C3ZLJ1	Uncharacterized protein.	CS domain-containing protein.	0.442
C3ZLJ1_BRAFL	C3Y0D1_BRAFL	C3ZLJ1	C3Y0D1	CS domain-containing protein.	CENP-F_N domain-containing protein.	0.694
C3ZLJ1_BRAFL	C3ZJT9_BRAFL	C3ZLJ1	C3ZJT9	CS domain-containing protein.	Uncharacterized protein.	0.442