(31 nodes) Very-low-density lipoprotein particle network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XQ43_BRAFL	Uncharacterized protein. (1439 aa)
	C3XV02_BRAFL	Uncharacterized protein. (1615 aa)
	C3Y338_BRAFL	Uncharacterized protein. (1291 aa)
	C3Y727_BRAFL	Prenylcys_lyase domain-containing protein. (1050 aa)
	C3Y899_BRAFL	Uncharacterized protein. (172 aa)
	C3Y985_BRAFL	Uncharacterized protein. (282 aa)
	C3Y9M6_BRAFL	Uncharacterized protein. (567 aa)
	C3YBS3_BRAFL	Uncharacterized protein. (875 aa)
	C3YFZ9_BRAFL	Uncharacterized protein. (72 aa)
	C3YJU3_BRAFL	Uncharacterized protein. (54 aa)
	C3YLE3_BRAFL	Lipase domain-containing protein. (72 aa)
	C3YLE6_BRAFL	Uncharacterized protein. (502 aa)
	C3YLE8_BRAFL	Lipase domain-containing protein. (83 aa)
	C3YLS4_BRAFL	Uncharacterized protein. (778 aa)
	C3YN17_BRAFL	Uncharacterized protein. (117 aa)
	C3YU82_BRAFL	Uncharacterized protein. (211 aa)
	C3YW68_BRAFL	Uncharacterized protein. (1067 aa)
	C3YWM4_BRAFL	Uncharacterized protein. (266 aa)
	C3Z0F5_BRAFL	Uncharacterized protein. (145 aa)
	C3Z4J1_BRAFL	Uncharacterized protein. (1288 aa)
	C3Z845_BRAFL	Uncharacterized protein. (765 aa)
	C3ZFJ7_BRAFL	Uncharacterized protein. (1498 aa)
	C3ZIN0_BRAFL	Lipase domain-containing protein. (78 aa)
	C3ZJT6_BRAFL	C-type lectin domain-containing protein. (594 aa)
	C3ZNN6_BRAFL	Uncharacterized protein. (201 aa)
	C3ZSZ0_BRAFL	Prenylcys_lyase domain-containing protein. (469 aa)
	C3ZUI6_BRAFL	Uncharacterized protein. (224 aa)
	C3ZV10_BRAFL	Uncharacterized protein. (219 aa)
	C3ZVD7_BRAFL	Uncharacterized protein. (141 aa)
	C3ZX28_BRAFL	Uncharacterized protein. (102 aa)
	C4A093_BRAFL	Uncharacterized protein. (452 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y899_BRAFL	C3Z0F5_BRAFL	C3Y899	C3Z0F5	Uncharacterized protein.	Uncharacterized protein.	0.521
C3Y899_BRAFL	C3ZNN6_BRAFL	C3Y899	C3ZNN6	Uncharacterized protein.	Uncharacterized protein.	0.511
C3Y9M6_BRAFL	C3ZVD7_BRAFL	C3Y9M6	C3ZVD7	Uncharacterized protein.	Uncharacterized protein.	0.485
C3YFZ9_BRAFL	C3Z0F5_BRAFL	C3YFZ9	C3Z0F5	Uncharacterized protein.	Uncharacterized protein.	0.400
C3YFZ9_BRAFL	C3ZNN6_BRAFL	C3YFZ9	C3ZNN6	Uncharacterized protein.	Uncharacterized protein.	0.425
C3YFZ9_BRAFL	C3ZUI6_BRAFL	C3YFZ9	C3ZUI6	Uncharacterized protein.	Uncharacterized protein.	0.434
C3YFZ9_BRAFL	C3ZV10_BRAFL	C3YFZ9	C3ZV10	Uncharacterized protein.	Uncharacterized protein.	0.514
C3YFZ9_BRAFL	C3ZVD7_BRAFL	C3YFZ9	C3ZVD7	Uncharacterized protein.	Uncharacterized protein.	0.517
C3YFZ9_BRAFL	C3ZX28_BRAFL	C3YFZ9	C3ZX28	Uncharacterized protein.	Uncharacterized protein.	0.522
C3YLE6_BRAFL	C3YLE8_BRAFL	C3YLE6	C3YLE8	Uncharacterized protein.	Lipase domain-containing protein.	0.650
C3YLE8_BRAFL	C3YLE6_BRAFL	C3YLE8	C3YLE6	Lipase domain-containing protein.	Uncharacterized protein.	0.650
C3YN17_BRAFL	C3Z0F5_BRAFL	C3YN17	C3Z0F5	Uncharacterized protein.	Uncharacterized protein.	0.444
C3YN17_BRAFL	C3ZNN6_BRAFL	C3YN17	C3ZNN6	Uncharacterized protein.	Uncharacterized protein.	0.460
C3Z0F5_BRAFL	C3Y899_BRAFL	C3Z0F5	C3Y899	Uncharacterized protein.	Uncharacterized protein.	0.521
C3Z0F5_BRAFL	C3YFZ9_BRAFL	C3Z0F5	C3YFZ9	Uncharacterized protein.	Uncharacterized protein.	0.400
C3Z0F5_BRAFL	C3YN17_BRAFL	C3Z0F5	C3YN17	Uncharacterized protein.	Uncharacterized protein.	0.444
C3Z0F5_BRAFL	C3ZV10_BRAFL	C3Z0F5	C3ZV10	Uncharacterized protein.	Uncharacterized protein.	0.514
C3ZNN6_BRAFL	C3Y899_BRAFL	C3ZNN6	C3Y899	Uncharacterized protein.	Uncharacterized protein.	0.511
C3ZNN6_BRAFL	C3YFZ9_BRAFL	C3ZNN6	C3YFZ9	Uncharacterized protein.	Uncharacterized protein.	0.425
C3ZNN6_BRAFL	C3YN17_BRAFL	C3ZNN6	C3YN17	Uncharacterized protein.	Uncharacterized protein.	0.460