(23 nodes) Centriolar satellite network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZZA5_BRAFL	Uncharacterized protein. (883 aa)
	C4A034_BRAFL	Uncharacterized protein. (303 aa)
	C3XTF4_BRAFL	C2 domain-containing protein. (371 aa)
	C3XTF5_BRAFL	Uncharacterized protein. (103 aa)
	C3XWD2_BRAFL	PCM1_C domain-containing protein. (1969 aa)
	C3XXQ6_BRAFL	Uncharacterized protein. (697 aa)
	C3Y273_BRAFL	PDZ domain-containing protein. (243 aa)
	C3Y5F2_BRAFL	Ras-associating domain-containing protein. (377 aa)
	C3Y8Z9_BRAFL	Uncharacterized protein. (470 aa)
	C3Y945_BRAFL	Uncharacterized protein. (223 aa)
	C3Y946_BRAFL	Uncharacterized protein. (815 aa)
	C3YEP9_BRAFL	Uncharacterized protein. (1042 aa)
	C3YL75_BRAFL	Uncharacterized protein. (286 aa)
	C3YPH9_BRAFL	CCDC66 domain-containing protein. (1098 aa)
	C3YQ26_BRAFL	Uncharacterized protein. (150 aa)
	C3YQ27_BRAFL	Uncharacterized protein. (824 aa)
	C3Z106_BRAFL	Uncharacterized protein. (187 aa)
	C3ZBE2_BRAFL	DUF4201 domain-containing protein. (392 aa)
	C3ZD24_BRAFL	Uncharacterized protein. (3304 aa)
	C3ZH04_BRAFL	Uncharacterized protein. (578 aa)
	C3ZKZ2_BRAFL	Uncharacterized protein. (388 aa)
	C3ZUA2_BRAFL	Uncharacterized protein. (1513 aa)
	C3XTF2_BRAFL	Uncharacterized protein. (832 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTF2_BRAFL	C3XTF4_BRAFL	C3XTF2	C3XTF4	Uncharacterized protein.	C2 domain-containing protein.	0.884
C3XTF4_BRAFL	C3XTF2_BRAFL	C3XTF4	C3XTF2	C2 domain-containing protein.	Uncharacterized protein.	0.884
C3XWD2_BRAFL	C3ZKZ2_BRAFL	C3XWD2	C3ZKZ2	PCM1_C domain-containing protein.	Uncharacterized protein.	0.750
C3XWD2_BRAFL	C3ZZA5_BRAFL	C3XWD2	C3ZZA5	PCM1_C domain-containing protein.	Uncharacterized protein.	0.426
C3XWD2_BRAFL	C4A034_BRAFL	C3XWD2	C4A034	PCM1_C domain-containing protein.	Uncharacterized protein.	0.712
C3XXQ6_BRAFL	C3YEP9_BRAFL	C3XXQ6	C3YEP9	Uncharacterized protein.	Uncharacterized protein.	0.432
C3XXQ6_BRAFL	C3YL75_BRAFL	C3XXQ6	C3YL75	Uncharacterized protein.	Uncharacterized protein.	0.538
C3Y945_BRAFL	C3Y946_BRAFL	C3Y945	C3Y946	Uncharacterized protein.	Uncharacterized protein.	0.833
C3Y946_BRAFL	C3Y945_BRAFL	C3Y946	C3Y945	Uncharacterized protein.	Uncharacterized protein.	0.833
C3YEP9_BRAFL	C3XXQ6_BRAFL	C3YEP9	C3XXQ6	Uncharacterized protein.	Uncharacterized protein.	0.432
C3YEP9_BRAFL	C3ZUA2_BRAFL	C3YEP9	C3ZUA2	Uncharacterized protein.	Uncharacterized protein.	0.401
C3YEP9_BRAFL	C3ZZA5_BRAFL	C3YEP9	C3ZZA5	Uncharacterized protein.	Uncharacterized protein.	0.591
C3YEP9_BRAFL	C4A034_BRAFL	C3YEP9	C4A034	Uncharacterized protein.	Uncharacterized protein.	0.440
C3YL75_BRAFL	C3XXQ6_BRAFL	C3YL75	C3XXQ6	Uncharacterized protein.	Uncharacterized protein.	0.538
C3YPH9_BRAFL	C3ZKZ2_BRAFL	C3YPH9	C3ZKZ2	CCDC66 domain-containing protein.	Uncharacterized protein.	0.473
C3ZH04_BRAFL	C3ZZA5_BRAFL	C3ZH04	C3ZZA5	Uncharacterized protein.	Uncharacterized protein.	0.482
C3ZKZ2_BRAFL	C3XWD2_BRAFL	C3ZKZ2	C3XWD2	Uncharacterized protein.	PCM1_C domain-containing protein.	0.750
C3ZKZ2_BRAFL	C3YPH9_BRAFL	C3ZKZ2	C3YPH9	Uncharacterized protein.	CCDC66 domain-containing protein.	0.473
C3ZKZ2_BRAFL	C4A034_BRAFL	C3ZKZ2	C4A034	Uncharacterized protein.	Uncharacterized protein.	0.503
C3ZUA2_BRAFL	C3YEP9_BRAFL	C3ZUA2	C3YEP9	Uncharacterized protein.	Uncharacterized protein.	0.401