(7 nodes) Seh1-associated complex network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZDE1_BRAFL	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (323 aa)
	C3YUP0_BRAFL	Uncharacterized protein. (627 aa)
	C3YC70_BRAFL	Uncharacterized protein. (448 aa)
	C3YJB0_BRAFL	WD_REPEATS_REGION domain-containing protein. (739 aa)
	C3YFB9_BRAFL	Uncharacterized protein. (968 aa)
	C3ZVA8_BRAFL	Uncharacterized protein. (385 aa)
	C3ZHU1_BRAFL	DEP domain-containing protein. (1742 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3YC70_BRAFL	C3YFB9_BRAFL	C3YC70	C3YFB9	Uncharacterized protein.	Uncharacterized protein.	0.999
C3YC70_BRAFL	C3YJB0_BRAFL	C3YC70	C3YJB0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
C3YC70_BRAFL	C3ZDE1_BRAFL	C3YC70	C3ZDE1	Uncharacterized protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.987
C3YC70_BRAFL	C3ZHU1_BRAFL	C3YC70	C3ZHU1	Uncharacterized protein.	DEP domain-containing protein.	0.999
C3YC70_BRAFL	C3ZVA8_BRAFL	C3YC70	C3ZVA8	Uncharacterized protein.	Uncharacterized protein.	0.999
C3YFB9_BRAFL	C3YC70_BRAFL	C3YFB9	C3YC70	Uncharacterized protein.	Uncharacterized protein.	0.999
C3YFB9_BRAFL	C3YJB0_BRAFL	C3YFB9	C3YJB0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
C3YFB9_BRAFL	C3YUP0_BRAFL	C3YFB9	C3YUP0	Uncharacterized protein.	Uncharacterized protein.	0.542
C3YFB9_BRAFL	C3ZDE1_BRAFL	C3YFB9	C3ZDE1	Uncharacterized protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.999
C3YFB9_BRAFL	C3ZHU1_BRAFL	C3YFB9	C3ZHU1	Uncharacterized protein.	DEP domain-containing protein.	0.999
C3YFB9_BRAFL	C3ZVA8_BRAFL	C3YFB9	C3ZVA8	Uncharacterized protein.	Uncharacterized protein.	0.999
C3YJB0_BRAFL	C3YC70_BRAFL	C3YJB0	C3YC70	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
C3YJB0_BRAFL	C3YFB9_BRAFL	C3YJB0	C3YFB9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
C3YJB0_BRAFL	C3YUP0_BRAFL	C3YJB0	C3YUP0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.562
C3YJB0_BRAFL	C3ZDE1_BRAFL	C3YJB0	C3ZDE1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.999
C3YJB0_BRAFL	C3ZHU1_BRAFL	C3YJB0	C3ZHU1	WD_REPEATS_REGION domain-containing protein.	DEP domain-containing protein.	0.999
C3YJB0_BRAFL	C3ZVA8_BRAFL	C3YJB0	C3ZVA8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
C3YUP0_BRAFL	C3YFB9_BRAFL	C3YUP0	C3YFB9	Uncharacterized protein.	Uncharacterized protein.	0.542
C3YUP0_BRAFL	C3YJB0_BRAFL	C3YUP0	C3YJB0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.562
C3ZDE1_BRAFL	C3YC70_BRAFL	C3ZDE1	C3YC70	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.987