(21 nodes) Site of double-strand break network (Branchiostoma floridae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZCS1_BRAFL	Uncharacterized protein. (716 aa)
	C3Y429_BRAFL	Uncharacterized protein. (1173 aa)
	C3Y4R4_BRAFL	Helicase C-terminal domain-containing protein. (392 aa)
	C3YBF4_BRAFL	Uncharacterized protein. (2359 aa)
	C3YDF6_BRAFL	ANK_REP_REGION domain-containing protein. (91 aa)
	C3YFK4_BRAFL	Uncharacterized protein. (683 aa)
	C3YG90_BRAFL	FHA_2 domain-containing protein. (633 aa)
	C3YGG0_BRAFL	Uncharacterized protein. (1356 aa)
	C3YJ28_BRAFL	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (510 aa)
	C3YMU6_BRAFL	Death domain-containing protein. (482 aa)
	C3YT49_BRAFL	Uncharacterized protein. (471 aa)
	C3YT95_BRAFL	Uncharacterized protein. (1560 aa)
	C3YV86_BRAFL	Uncharacterized protein. (269 aa)
	C3Z2P3_BRAFL	Poly [ADP-ribose] polymerase. (516 aa)
	C3ZBE1_BRAFL	Uncharacterized protein. (344 aa)
	C3ZET1_BRAFL	Uncharacterized protein. (632 aa)
	C3ZET3_BRAFL	RING-type domain-containing protein. (121 aa)
	C3ZHE7_BRAFL	RING-type domain-containing protein. (556 aa)
	C3ZNR8_BRAFL	Uncharacterized protein. (987 aa)
	C3ZTJ4_BRAFL	Uncharacterized protein. (502 aa)
	C3ZZJ5_BRAFL	FHA_2 domain-containing protein. (427 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y4R4_BRAFL	C3YBF4_BRAFL	C3Y4R4	C3YBF4	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.436
C3Y4R4_BRAFL	C3YDF6_BRAFL	C3Y4R4	C3YDF6	Helicase C-terminal domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.435
C3YBF4_BRAFL	C3Y4R4_BRAFL	C3YBF4	C3Y4R4	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.436
C3YBF4_BRAFL	C3YDF6_BRAFL	C3YBF4	C3YDF6	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.927
C3YBF4_BRAFL	C3ZET1_BRAFL	C3YBF4	C3ZET1	Uncharacterized protein.	Uncharacterized protein.	0.739
C3YBF4_BRAFL	C3ZET3_BRAFL	C3YBF4	C3ZET3	Uncharacterized protein.	RING-type domain-containing protein.	0.934
C3YBF4_BRAFL	C3ZHE7_BRAFL	C3YBF4	C3ZHE7	Uncharacterized protein.	RING-type domain-containing protein.	0.471
C3YBF4_BRAFL	C3ZNR8_BRAFL	C3YBF4	C3ZNR8	Uncharacterized protein.	Uncharacterized protein.	0.447
C3YBF4_BRAFL	C3ZTJ4_BRAFL	C3YBF4	C3ZTJ4	Uncharacterized protein.	Uncharacterized protein.	0.436
C3YDF6_BRAFL	C3Y4R4_BRAFL	C3YDF6	C3Y4R4	ANK_REP_REGION domain-containing protein.	Helicase C-terminal domain-containing protein.	0.435
C3YDF6_BRAFL	C3YBF4_BRAFL	C3YDF6	C3YBF4	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.927
C3YDF6_BRAFL	C3ZET1_BRAFL	C3YDF6	C3ZET1	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.422
C3YDF6_BRAFL	C3ZTJ4_BRAFL	C3YDF6	C3ZTJ4	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.435
C3YG90_BRAFL	C3YJ28_BRAFL	C3YG90	C3YJ28	FHA_2 domain-containing protein.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.674
C3YJ28_BRAFL	C3YG90_BRAFL	C3YJ28	C3YG90	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	FHA_2 domain-containing protein.	0.674
C3YJ28_BRAFL	C3YT49_BRAFL	C3YJ28	C3YT49	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	Uncharacterized protein.	0.674
C3YJ28_BRAFL	C3Z2P3_BRAFL	C3YJ28	C3Z2P3	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	Poly [ADP-ribose] polymerase.	0.440
C3YJ28_BRAFL	C3ZZJ5_BRAFL	C3YJ28	C3ZZJ5	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	FHA_2 domain-containing protein.	0.425
C3YT49_BRAFL	C3YJ28_BRAFL	C3YT49	C3YJ28	Uncharacterized protein.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.674
C3Z2P3_BRAFL	C3YJ28_BRAFL	C3Z2P3	C3YJ28	Poly [ADP-ribose] polymerase.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.440