(10 nodes) Terminal bouton network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y0P7_BRAFL	Uncharacterized protein. (584 aa)
	C3Y1H2_BRAFL	Uncharacterized protein. (1144 aa)
	C3Y3Z5_BRAFL	Uncharacterized protein. (146 aa)
	C3YIE0_BRAFL	Adaptin_N domain-containing protein. (1179 aa)
	C3Z0W2_BRAFL	MFS domain-containing protein. (285 aa)
	C3Z1A4_BRAFL	Uncharacterized protein. (313 aa)
	C3Z4L5_BRAFL	MFS domain-containing protein. (461 aa)
	C3ZBZ9_BRAFL	Uncharacterized protein. (262 aa)
	C3ZTN5_BRAFL	MFS domain-containing protein. (487 aa)
	C4A0Y2_BRAFL	Uncharacterized protein. (166 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y1H2_BRAFL	C3Y3Z5_BRAFL	C3Y1H2	C3Y3Z5	Uncharacterized protein.	Uncharacterized protein.	0.591
C3Y1H2_BRAFL	C3Z0W2_BRAFL	C3Y1H2	C3Z0W2	Uncharacterized protein.	MFS domain-containing protein.	0.414
C3Y1H2_BRAFL	C3Z4L5_BRAFL	C3Y1H2	C3Z4L5	Uncharacterized protein.	MFS domain-containing protein.	0.704
C3Y1H2_BRAFL	C3ZTN5_BRAFL	C3Y1H2	C3ZTN5	Uncharacterized protein.	MFS domain-containing protein.	0.414
C3Y1H2_BRAFL	C4A0Y2_BRAFL	C3Y1H2	C4A0Y2	Uncharacterized protein.	Uncharacterized protein.	0.414
C3Y3Z5_BRAFL	C3Y1H2_BRAFL	C3Y3Z5	C3Y1H2	Uncharacterized protein.	Uncharacterized protein.	0.591
C3YIE0_BRAFL	C3Z4L5_BRAFL	C3YIE0	C3Z4L5	Adaptin_N domain-containing protein.	MFS domain-containing protein.	0.640
C3Z0W2_BRAFL	C3Y1H2_BRAFL	C3Z0W2	C3Y1H2	MFS domain-containing protein.	Uncharacterized protein.	0.414
C3Z4L5_BRAFL	C3Y1H2_BRAFL	C3Z4L5	C3Y1H2	MFS domain-containing protein.	Uncharacterized protein.	0.704
C3Z4L5_BRAFL	C3YIE0_BRAFL	C3Z4L5	C3YIE0	MFS domain-containing protein.	Adaptin_N domain-containing protein.	0.640
C3ZTN5_BRAFL	C3Y1H2_BRAFL	C3ZTN5	C3Y1H2	MFS domain-containing protein.	Uncharacterized protein.	0.414
C4A0Y2_BRAFL	C3Y1H2_BRAFL	C4A0Y2	C3Y1H2	Uncharacterized protein.	Uncharacterized protein.	0.414