(38 nodes) Phagocytic vesicle network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YW66_BRAFL	Ras-related protein rab-9a. (180 aa)
	C3YDN5_BRAFL	TIR domain-containing protein; Belongs to the Toll-like receptor family. (361 aa)
	C3XVW0_BRAFL	Uncharacterized protein. (670 aa)
	C3XVW1_BRAFL	PID domain-containing protein. (686 aa)
	C3XVW2_BRAFL	PID domain-containing protein. (120 aa)
	C3XX84_BRAFL	TIR domain-containing protein; Belongs to the Toll-like receptor family. (541 aa)
	C3ZWZ0_BRAFL	TIR domain-containing protein. (99 aa)
	C3ZWY9_BRAFL	TIR domain-containing protein. (116 aa)
	C3ZWR5_BRAFL	TIR domain-containing protein. (141 aa)
	C3ZTG4_BRAFL	Uncharacterized protein. (215 aa)
	C3ZSY6_BRAFL	TIR domain-containing protein. (160 aa)
	C3ZS01_BRAFL	RAS oncogene protein. (237 aa)
	C3YPS8_BRAFL	Uncharacterized protein. (712 aa)
	C3ZMJ0_BRAFL	TIR domain-containing protein; Belongs to the Toll-like receptor family. (854 aa)
	C3ZIX9_BRAFL	TIR domain-containing protein; Belongs to the Toll-like receptor family. (866 aa)
	C3ZEI0_BRAFL	Uncharacterized protein. (246 aa)
	C3Y4F2_BRAFL	TIR domain-containing protein. (554 aa)
	C3Y6J9_BRAFL	TIR domain-containing protein; Belongs to the Toll-like receptor family. (715 aa)
	C3ZC01_BRAFL	Uncharacterized protein. (164 aa)
	C3Z921_BRAFL	Uncharacterized protein. (101 aa)
	C3Z904_BRAFL	Uncharacterized protein. (205 aa)
	C3Z844_BRAFL	TIR domain-containing protein. (575 aa)
	C3Z839_BRAFL	TIR domain-containing protein. (295 aa)
	C3Z838_BRAFL	TIR domain-containing protein. (684 aa)
	C3Z6Q7_BRAFL	TIR domain-containing protein. (314 aa)
	C3Z6K0_BRAFL	Uncharacterized protein. (269 aa)
	C3Z351_BRAFL	Uncharacterized protein. (129 aa)
	C3Z064_BRAFL	TIR domain-containing protein; Belongs to the Toll-like receptor family. (869 aa)
	C3YXJ4_BRAFL	IPPc domain-containing protein. (199 aa)
	C3YXJ2_BRAFL	Rho-GAP domain-containing protein. (531 aa)
	C3YWD2_BRAFL	PH domain-containing protein. (597 aa)
	C3YFJ1_BRAFL	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (210 aa)
	C3YL25_BRAFL	TIR domain-containing protein. (332 aa)
	C3YLZ4_BRAFL	Uncharacterized protein. (88 aa)
	C3YV50_BRAFL	Uncharacterized protein. (208 aa)
	C3YRV4_BRAFL	Uncharacterized protein. (198 aa)
	C3Y8H3_BRAFL	Uncharacterized protein. (180 aa)
	C3YA80_BRAFL	Uncharacterized protein. (144 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XVW0_BRAFL	C3YPS8_BRAFL	C3XVW0	C3YPS8	Uncharacterized protein.	Uncharacterized protein.	0.869
C3XVW1_BRAFL	C3YPS8_BRAFL	C3XVW1	C3YPS8	PID domain-containing protein.	Uncharacterized protein.	0.869
C3XVW2_BRAFL	C3YPS8_BRAFL	C3XVW2	C3YPS8	PID domain-containing protein.	Uncharacterized protein.	0.862
C3YA80_BRAFL	C3YV50_BRAFL	C3YA80	C3YV50	Uncharacterized protein.	Uncharacterized protein.	0.445
C3YPS8_BRAFL	C3XVW0_BRAFL	C3YPS8	C3XVW0	Uncharacterized protein.	Uncharacterized protein.	0.869
C3YPS8_BRAFL	C3XVW1_BRAFL	C3YPS8	C3XVW1	Uncharacterized protein.	PID domain-containing protein.	0.869
C3YPS8_BRAFL	C3XVW2_BRAFL	C3YPS8	C3XVW2	Uncharacterized protein.	PID domain-containing protein.	0.862
C3YPS8_BRAFL	C3YV50_BRAFL	C3YPS8	C3YV50	Uncharacterized protein.	Uncharacterized protein.	0.940
C3YPS8_BRAFL	C3YWD2_BRAFL	C3YPS8	C3YWD2	Uncharacterized protein.	PH domain-containing protein.	0.863
C3YPS8_BRAFL	C3YXJ2_BRAFL	C3YPS8	C3YXJ2	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.538
C3YPS8_BRAFL	C3YXJ4_BRAFL	C3YPS8	C3YXJ4	Uncharacterized protein.	IPPc domain-containing protein.	0.532
C3YPS8_BRAFL	C3ZC01_BRAFL	C3YPS8	C3ZC01	Uncharacterized protein.	Uncharacterized protein.	0.940
C3YRV4_BRAFL	C3YV50_BRAFL	C3YRV4	C3YV50	Uncharacterized protein.	Uncharacterized protein.	0.506
C3YRV4_BRAFL	C3ZC01_BRAFL	C3YRV4	C3ZC01	Uncharacterized protein.	Uncharacterized protein.	0.457
C3YV50_BRAFL	C3YA80_BRAFL	C3YV50	C3YA80	Uncharacterized protein.	Uncharacterized protein.	0.445
C3YV50_BRAFL	C3YPS8_BRAFL	C3YV50	C3YPS8	Uncharacterized protein.	Uncharacterized protein.	0.940
C3YV50_BRAFL	C3YRV4_BRAFL	C3YV50	C3YRV4	Uncharacterized protein.	Uncharacterized protein.	0.506
C3YV50_BRAFL	C3YW66_BRAFL	C3YV50	C3YW66	Uncharacterized protein.	Ras-related protein rab-9a.	0.521
C3YV50_BRAFL	C3Z921_BRAFL	C3YV50	C3Z921	Uncharacterized protein.	Uncharacterized protein.	0.538
C3YV50_BRAFL	C3ZTG4_BRAFL	C3YV50	C3ZTG4	Uncharacterized protein.	Uncharacterized protein.	0.549