(9 nodes) Nonhomologous end joining complex network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YWT2_BRAFL	C3H1-type domain-containing protein. (418 aa)
	C3YF64_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (4388 aa)
	C3XXK2_BRAFL	Uncharacterized protein. (212 aa)
	C3YDS9_BRAFL	Uncharacterized protein. (326 aa)
	C3YF62_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (311 aa)
	C3ZGW7_BRAFL	Uncharacterized protein. (175 aa)
	C3ZGW5_BRAFL	Uncharacterized protein. (243 aa)
	C3YZ01_BRAFL	DNA ligase. (793 aa)
	C3YPJ3_BRAFL	DRMBL domain-containing protein. (387 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XXK2_BRAFL	C3YDS9_BRAFL	C3XXK2	C3YDS9	Uncharacterized protein.	Uncharacterized protein.	0.765
C3XXK2_BRAFL	C3YF62_BRAFL	C3XXK2	C3YF62	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.448
C3XXK2_BRAFL	C3YF64_BRAFL	C3XXK2	C3YF64	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.448
C3XXK2_BRAFL	C3YZ01_BRAFL	C3XXK2	C3YZ01	Uncharacterized protein.	DNA ligase.	0.769
C3XXK2_BRAFL	C3ZGW5_BRAFL	C3XXK2	C3ZGW5	Uncharacterized protein.	Uncharacterized protein.	0.676
C3YDS9_BRAFL	C3XXK2_BRAFL	C3YDS9	C3XXK2	Uncharacterized protein.	Uncharacterized protein.	0.765
C3YDS9_BRAFL	C3YF62_BRAFL	C3YDS9	C3YF62	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.515
C3YDS9_BRAFL	C3YF64_BRAFL	C3YDS9	C3YF64	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.515
C3YDS9_BRAFL	C3YPJ3_BRAFL	C3YDS9	C3YPJ3	Uncharacterized protein.	DRMBL domain-containing protein.	0.544
C3YDS9_BRAFL	C3YZ01_BRAFL	C3YDS9	C3YZ01	Uncharacterized protein.	DNA ligase.	0.937
C3YDS9_BRAFL	C3ZGW5_BRAFL	C3YDS9	C3ZGW5	Uncharacterized protein.	Uncharacterized protein.	0.676
C3YF62_BRAFL	C3XXK2_BRAFL	C3YF62	C3XXK2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.448
C3YF62_BRAFL	C3YDS9_BRAFL	C3YF62	C3YDS9	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.515
C3YF62_BRAFL	C3YF64_BRAFL	C3YF62	C3YF64	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.947
C3YF62_BRAFL	C3YPJ3_BRAFL	C3YF62	C3YPJ3	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DRMBL domain-containing protein.	0.956
C3YF62_BRAFL	C3YZ01_BRAFL	C3YF62	C3YZ01	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DNA ligase.	0.862
C3YF64_BRAFL	C3XXK2_BRAFL	C3YF64	C3XXK2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.448
C3YF64_BRAFL	C3YDS9_BRAFL	C3YF64	C3YDS9	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.515
C3YF64_BRAFL	C3YF62_BRAFL	C3YF64	C3YF62	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.947
C3YF64_BRAFL	C3YPJ3_BRAFL	C3YF64	C3YPJ3	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DRMBL domain-containing protein.	0.956