(17 nodes) Lysosome-associated membrane glycoprotein network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Z5U8_BRAFL	Uncharacterized protein. (199 aa)
	C3ZMF8_BRAFL	Uncharacterized protein. (677 aa)
	Zic	Uncharacterized protein. (161 aa)
	C3Y041_BRAFL	Uncharacterized protein. (701 aa)
	C3YL87_BRAFL	Uncharacterized protein. (135 aa)
	C3YGW1_BRAFL	Uncharacterized protein. (513 aa)
	C3YL88_BRAFL	Uncharacterized protein. (980 aa)
	C3XZZ1_BRAFL	Uncharacterized protein. (250 aa)
	C3XZV0_BRAFL	Uncharacterized protein. (887 aa)
	C3YLZ4_BRAFL	Uncharacterized protein. (88 aa)
	C3YXT0_BRAFL	Uncharacterized protein. (694 aa)
	C3Z4Q1_BRAFL	Uncharacterized protein. (392 aa)
	C3Z4U5_BRAFL	Uncharacterized protein. (717 aa)
	C3Z5U7_BRAFL	Uncharacterized protein. (648 aa)
	C3Z5U9_BRAFL	Uncharacterized protein. (224 aa)
	C3ZA99_BRAFL	Uncharacterized protein. (557 aa)
	C3ZEI0_BRAFL	Uncharacterized protein. (246 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XZV0_BRAFL	C3YLZ4_BRAFL	C3XZV0	C3YLZ4	Uncharacterized protein.	Uncharacterized protein.	0.483
C3XZV0_BRAFL	C3ZEI0_BRAFL	C3XZV0	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3Y041_BRAFL	C3YLZ4_BRAFL	C3Y041	C3YLZ4	Uncharacterized protein.	Uncharacterized protein.	0.483
C3Y041_BRAFL	C3ZEI0_BRAFL	C3Y041	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YL87_BRAFL	C3YLZ4_BRAFL	C3YL87	C3YLZ4	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YL87_BRAFL	C3ZEI0_BRAFL	C3YL87	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YL88_BRAFL	C3YLZ4_BRAFL	C3YL88	C3YLZ4	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YL88_BRAFL	C3ZEI0_BRAFL	C3YL88	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YLZ4_BRAFL	C3XZV0_BRAFL	C3YLZ4	C3XZV0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YLZ4_BRAFL	C3Y041_BRAFL	C3YLZ4	C3Y041	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YLZ4_BRAFL	C3YL87_BRAFL	C3YLZ4	C3YL87	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YLZ4_BRAFL	C3YL88_BRAFL	C3YLZ4	C3YL88	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YLZ4_BRAFL	C3YXT0_BRAFL	C3YLZ4	C3YXT0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YLZ4_BRAFL	C3Z5U7_BRAFL	C3YLZ4	C3Z5U7	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YLZ4_BRAFL	C3ZA99_BRAFL	C3YLZ4	C3ZA99	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YLZ4_BRAFL	C3ZMF8_BRAFL	C3YLZ4	C3ZMF8	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YXT0_BRAFL	C3YLZ4_BRAFL	C3YXT0	C3YLZ4	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YXT0_BRAFL	C3ZEI0_BRAFL	C3YXT0	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3Z5U7_BRAFL	C3YLZ4_BRAFL	C3Z5U7	C3YLZ4	Uncharacterized protein.	Uncharacterized protein.	0.483
C3Z5U7_BRAFL	C3ZEI0_BRAFL	C3Z5U7	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.513