(16 nodes) Spectrin repeat network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZZQ2_BRAFL	Uncharacterized protein. (348 aa)
	C3Z0E4_BRAFL	Uncharacterized protein. (2185 aa)
	C3YYI5_BRAFL	CRAL-TRIO domain-containing protein. (844 aa)
	C3YYI3_BRAFL	Uncharacterized protein. (2180 aa)
	C3YXT6_BRAFL	Uncharacterized protein. (2131 aa)
	C3YXT5_BRAFL	Uncharacterized protein. (319 aa)
	C3YXT3_BRAFL	Calponin-homology (CH) domain-containing protein. (1747 aa)
	C3YH13_BRAFL	KASH domain-containing protein. (2704 aa)
	C3Y0N1_BRAFL	Uncharacterized protein. (5098 aa)
	C3XQZ8_BRAFL	Spectrin beta chain; Belongs to the spectrin family. (2357 aa)
	C3XRB2_BRAFL	Uncharacterized protein. (8372 aa)
	C3ZQA4_BRAFL	Spectrin beta chain; Belongs to the spectrin family. (2039 aa)
	C3ZQC3_BRAFL	Uncharacterized protein. (1892 aa)
	C3XZ42_BRAFL	Uncharacterized protein. (893 aa)
	C3YBC3_BRAFL	Uncharacterized protein. (2153 aa)
	C3YBC4_BRAFL	Uncharacterized protein. (7064 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XZ42_BRAFL	C3YBC3_BRAFL	C3XZ42	C3YBC3	Uncharacterized protein.	Uncharacterized protein.	0.824
C3XZ42_BRAFL	C3YXT3_BRAFL	C3XZ42	C3YXT3	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.500
C3XZ42_BRAFL	C3YXT5_BRAFL	C3XZ42	C3YXT5	Uncharacterized protein.	Uncharacterized protein.	0.500
C3XZ42_BRAFL	C3YXT6_BRAFL	C3XZ42	C3YXT6	Uncharacterized protein.	Uncharacterized protein.	0.500
C3YBC3_BRAFL	C3XZ42_BRAFL	C3YBC3	C3XZ42	Uncharacterized protein.	Uncharacterized protein.	0.824
C3YXT3_BRAFL	C3XZ42_BRAFL	C3YXT3	C3XZ42	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.500
C3YXT3_BRAFL	C3YXT5_BRAFL	C3YXT3	C3YXT5	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.447
C3YXT3_BRAFL	C3YXT6_BRAFL	C3YXT3	C3YXT6	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.538
C3YXT5_BRAFL	C3XZ42_BRAFL	C3YXT5	C3XZ42	Uncharacterized protein.	Uncharacterized protein.	0.500
C3YXT5_BRAFL	C3YXT3_BRAFL	C3YXT5	C3YXT3	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.447
C3YXT6_BRAFL	C3XZ42_BRAFL	C3YXT6	C3XZ42	Uncharacterized protein.	Uncharacterized protein.	0.500
C3YXT6_BRAFL	C3YXT3_BRAFL	C3YXT6	C3YXT3	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.538
C3YYI3_BRAFL	C3YYI5_BRAFL	C3YYI3	C3YYI5	Uncharacterized protein.	CRAL-TRIO domain-containing protein.	0.911
C3YYI5_BRAFL	C3YYI3_BRAFL	C3YYI5	C3YYI3	CRAL-TRIO domain-containing protein.	Uncharacterized protein.	0.911