(18 nodes) Pyridoxal phosphate-dependent decarboxylase network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Z4G4_BRAFL	Uncharacterized protein. (563 aa)
	C3ZZ27_BRAFL	Uncharacterized protein. (484 aa)
	C3ZXC6_BRAFL	Uncharacterized protein. (549 aa)
	C3ZWR9_BRAFL	Uncharacterized protein. (489 aa)
	C3ZS18_BRAFL	Uncharacterized protein. (480 aa)
	C3ZRR8_BRAFL	Uncharacterized protein. (489 aa)
	C3ZH05_BRAFL	Uncharacterized protein. (525 aa)
	C3ZED9_BRAFL	Uncharacterized protein. (479 aa)
	C3Z0P5_BRAFL	Uncharacterized protein. (469 aa)
	C3YI82_BRAFL	HPPK domain-containing protein. (737 aa)
	C3YHC7_BRAFL	Uncharacterized protein. (939 aa)
	C3Y6S5_BRAFL	Uncharacterized protein. (502 aa)
	C3Y6S3_BRAFL	Uncharacterized protein. (136 aa)
	C3Y6S2_BRAFL	Uncharacterized protein. (142 aa)
	C3Y5S8_BRAFL	Uncharacterized protein. (893 aa)
	C3Y062_BRAFL	Uncharacterized protein. (566 aa)
	C3XWS0_BRAFL	Uncharacterized protein. (424 aa)
	C3XSS1_BRAFL	Uncharacterized protein. (538 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XSS1_BRAFL	C3ZED9_BRAFL	C3XSS1	C3ZED9	Uncharacterized protein.	Uncharacterized protein.	0.902
C3XSS1_BRAFL	C3ZH05_BRAFL	C3XSS1	C3ZH05	Uncharacterized protein.	Uncharacterized protein.	0.902
C3Y6S2_BRAFL	C3ZZ27_BRAFL	C3Y6S2	C3ZZ27	Uncharacterized protein.	Uncharacterized protein.	0.552
C3ZED9_BRAFL	C3XSS1_BRAFL	C3ZED9	C3XSS1	Uncharacterized protein.	Uncharacterized protein.	0.902
C3ZED9_BRAFL	C3ZH05_BRAFL	C3ZED9	C3ZH05	Uncharacterized protein.	Uncharacterized protein.	0.902
C3ZH05_BRAFL	C3XSS1_BRAFL	C3ZH05	C3XSS1	Uncharacterized protein.	Uncharacterized protein.	0.902
C3ZH05_BRAFL	C3ZED9_BRAFL	C3ZH05	C3ZED9	Uncharacterized protein.	Uncharacterized protein.	0.902
C3ZZ27_BRAFL	C3Y6S2_BRAFL	C3ZZ27	C3Y6S2	Uncharacterized protein.	Uncharacterized protein.	0.552