(16 nodes) Aminotransferase, class I/classII network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YWW0_BRAFL	Aminotran_1_2 domain-containing protein. (394 aa)
	C3XR74_BRAFL	Aminotran_1_2 domain-containing protein. (483 aa)
	C3XR82_BRAFL	Uncharacterized protein. (472 aa)
	C3XWI3_BRAFL	Aminotran_1_2 domain-containing protein. (195 aa)
	C3YIV5_BRAFL	Aminotran_1_2 domain-containing protein. (412 aa)
	C3YPX4_BRAFL	Aminotran_1_2 domain-containing protein. (449 aa)
	C3YZI1_BRAFL	Aminotran_1_2 domain-containing protein. (214 aa)
	C3Z044_BRAFL	Uncharacterized protein. (393 aa)
	C3ZAH6_BRAFL	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. (453 aa)
	C3ZBR3_BRAFL	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. (436 aa)
	C3ZCP5_BRAFL	Uncharacterized protein. (373 aa)
	C3ZFM1_BRAFL	Aminotran_1_2 domain-containing protein. (468 aa)
	C3ZG28_BRAFL	Aminotran_1_2 domain-containing protein. (431 aa)
	C3ZTJ5_BRAFL	C2H2-type domain-containing protein. (676 aa)
	C3ZV83_BRAFL	Aminotran_1_2 domain-containing protein. (486 aa)
	C3ZZL9_BRAFL	Aspartate aminotransferase. (387 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XR74_BRAFL	C3XR82_BRAFL	C3XR74	C3XR82	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.546
C3XR74_BRAFL	C3ZFM1_BRAFL	C3XR74	C3ZFM1	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.995
C3XR74_BRAFL	C3ZTJ5_BRAFL	C3XR74	C3ZTJ5	Aminotran_1_2 domain-containing protein.	C2H2-type domain-containing protein.	0.908
C3XR82_BRAFL	C3XR74_BRAFL	C3XR82	C3XR74	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.546
C3XR82_BRAFL	C3ZFM1_BRAFL	C3XR82	C3ZFM1	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.961
C3XWI3_BRAFL	C3ZG28_BRAFL	C3XWI3	C3ZG28	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.921
C3YIV5_BRAFL	C3YWW0_BRAFL	C3YIV5	C3YWW0	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.457
C3YIV5_BRAFL	C3ZBR3_BRAFL	C3YIV5	C3ZBR3	Aminotran_1_2 domain-containing protein.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.963
C3YIV5_BRAFL	C3ZG28_BRAFL	C3YIV5	C3ZG28	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.936
C3YIV5_BRAFL	C3ZV83_BRAFL	C3YIV5	C3ZV83	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.788
C3YIV5_BRAFL	C3ZZL9_BRAFL	C3YIV5	C3ZZL9	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.980
C3YWW0_BRAFL	C3YIV5_BRAFL	C3YWW0	C3YIV5	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.457
C3YWW0_BRAFL	C3ZAH6_BRAFL	C3YWW0	C3ZAH6	Aminotran_1_2 domain-containing protein.	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.909
C3YWW0_BRAFL	C3ZZL9_BRAFL	C3YWW0	C3ZZL9	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.457
C3YZI1_BRAFL	C3ZCP5_BRAFL	C3YZI1	C3ZCP5	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.484
C3Z044_BRAFL	C3ZZL9_BRAFL	C3Z044	C3ZZL9	Uncharacterized protein.	Aspartate aminotransferase.	0.492
C3ZAH6_BRAFL	C3YWW0_BRAFL	C3ZAH6	C3YWW0	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Aminotran_1_2 domain-containing protein.	0.909
C3ZBR3_BRAFL	C3YIV5_BRAFL	C3ZBR3	C3YIV5	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	Aminotran_1_2 domain-containing protein.	0.963
C3ZBR3_BRAFL	C3ZZL9_BRAFL	C3ZBR3	C3ZZL9	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	Aspartate aminotransferase.	0.977
C3ZCP5_BRAFL	C3YZI1_BRAFL	C3ZCP5	C3YZI1	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.484