(23 nodes) Longin-like domain superfamily network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YKX3_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (206 aa)
	C3YLS1_BRAFL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (422 aa)
	C3YRU5_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	C3ZZP2_BRAFL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (98 aa)
	C3ZNY1_BRAFL	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (113 aa)
	C3ZLV4_BRAFL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (351 aa)
	C3ZBX3_BRAFL	Uncharacterized protein. (144 aa)
	C3Z511_BRAFL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (416 aa)
	C3Z3M3_BRAFL	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (220 aa)
	C3Z3J8_BRAFL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	C3YXG2_BRAFL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (158 aa)
	C3YSG3_BRAFL	Longin domain-containing protein; Belongs to the synaptobrevin family. (296 aa)
	C3YU04_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (226 aa)
	C3ZZP4_BRAFL	Clat_adaptor_s domain-containing protein. (150 aa)
	C3XTB6_BRAFL	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (229 aa)
	C3ZR06_BRAFL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (184 aa)
	C3ZV96_BRAFL	Uncharacterized protein. (112 aa)
	C3XZB0_BRAFL	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (511 aa)
	C3XZB1_BRAFL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (370 aa)
	C3XZE9_BRAFL	SRP54 domain-containing protein. (629 aa)
	C3Y078_BRAFL	Uncharacterized protein. (142 aa)
	C3Y4B1_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (198 aa)
	C3Y753_BRAFL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (186 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTB6_BRAFL	C3XZB0_BRAFL	C3XTB6	C3XZB0	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.996
C3XTB6_BRAFL	C3Y4B1_BRAFL	C3XTB6	C3Y4B1	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.705
C3XTB6_BRAFL	C3YSG3_BRAFL	C3XTB6	C3YSG3	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.739
C3XTB6_BRAFL	C3YU04_BRAFL	C3XTB6	C3YU04	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.784
C3XZB0_BRAFL	C3XTB6_BRAFL	C3XZB0	C3XTB6	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.996
C3XZB0_BRAFL	C3Y4B1_BRAFL	C3XZB0	C3Y4B1	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.730
C3XZB0_BRAFL	C3YSG3_BRAFL	C3XZB0	C3YSG3	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.752
C3XZB0_BRAFL	C3YU04_BRAFL	C3XZB0	C3YU04	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.797
C3XZB1_BRAFL	C3Y753_BRAFL	C3XZB1	C3Y753	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.799
C3XZB1_BRAFL	C3YKX3_BRAFL	C3XZB1	C3YKX3	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.434
C3XZB1_BRAFL	C3YRU5_BRAFL	C3XZB1	C3YRU5	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.505
C3XZB1_BRAFL	C3YXG2_BRAFL	C3XZB1	C3YXG2	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.918
C3XZB1_BRAFL	C3Z3J8_BRAFL	C3XZB1	C3Z3J8	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.598
C3XZB1_BRAFL	C3Z511_BRAFL	C3XZB1	C3Z511	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.436
C3XZB1_BRAFL	C3ZLV4_BRAFL	C3XZB1	C3ZLV4	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.591
C3XZB1_BRAFL	C3ZR06_BRAFL	C3XZB1	C3ZR06	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.827
C3XZB1_BRAFL	C3ZZP2_BRAFL	C3XZB1	C3ZZP2	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.696
C3XZB1_BRAFL	C3ZZP4_BRAFL	C3XZB1	C3ZZP4	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Clat_adaptor_s domain-containing protein.	0.878
C3Y078_BRAFL	C3Y4B1_BRAFL	C3Y078	C3Y4B1	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.833
C3Y078_BRAFL	C3YSG3_BRAFL	C3Y078	C3YSG3	Uncharacterized protein.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.679