(34 nodes) Zinc finger, NHR/GATA-type network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XRB0_BRAFL	Uncharacterized protein. (399 aa)
	C3XRB1_BRAFL	Uncharacterized protein. (367 aa)
	C3XRV2_BRAFL	Nuclear receptor domain-containing protein. (81 aa)
	C3XSS0_BRAFL	GATA-type domain-containing protein. (270 aa)
	C3XUD7_BRAFL	Uncharacterized protein. (486 aa)
	C3XUQ3_BRAFL	Uncharacterized protein. (375 aa)
	C3Y2V8_BRAFL	Uncharacterized protein. (427 aa)
	C3Y2X1_BRAFL	Uncharacterized protein. (336 aa)
	C3Y717_BRAFL	Nuclear receptor domain-containing protein. (1348 aa)
	C3YEV5_BRAFL	Uncharacterized protein. (359 aa)
	C3YIU7_BRAFL	Uncharacterized protein. (1125 aa)
	C3YIU8_BRAFL	Uncharacterized protein. (848 aa)
	C3YQR0_BRAFL	GATA-type domain-containing protein. (386 aa)
	C3YVG9_BRAFL	Uncharacterized protein. (473 aa)
	C3YVI8_BRAFL	Uncharacterized protein. (632 aa)
	C3YYK6_BRAFL	Uncharacterized protein. (581 aa)
	C3YYK7_BRAFL	Uncharacterized protein. (566 aa)
	C3YYX7_BRAFL	Uncharacterized protein. (419 aa)
	C3Z0Q0_BRAFL	Uncharacterized protein. (526 aa)
	C3Z507_BRAFL	Nuclear receptor domain-containing protein. (84 aa)
	C3Z508_BRAFL	Uncharacterized protein. (445 aa)
	C3Z6C1_BRAFL	Uncharacterized protein. (369 aa)
	C3Z6H1_BRAFL	Uncharacterized protein. (491 aa)
	C3Z6H4_BRAFL	Uncharacterized protein. (320 aa)
	C3Z7Z3_BRAFL	Uncharacterized protein. (1206 aa)
	C3ZE20_BRAFL	Uncharacterized protein. (304 aa)
	C3ZMT9_BRAFL	Uncharacterized protein. (2020 aa)
	C3ZPQ2_BRAFL	Uncharacterized protein. (343 aa)
	C3ZQ47_BRAFL	Nuclear receptor domain-containing protein. (70 aa)
	C3ZTM2_BRAFL	Nuclear receptor domain-containing protein. (1232 aa)
	C3ZTZ7_BRAFL	GATA-type domain-containing protein. (974 aa)
	C3ZZ31_BRAFL	Nuclear receptor domain-containing protein. (70 aa)
	C3ZZ49_BRAFL	Uncharacterized protein. (107 aa)
	Q8MX80_BRAFL	Retinoic acid receptor. (415 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRB1_BRAFL	C3YVG9_BRAFL	C3XRB1	C3YVG9	Uncharacterized protein.	Uncharacterized protein.	0.681
C3XRB1_BRAFL	C3Z508_BRAFL	C3XRB1	C3Z508	Uncharacterized protein.	Uncharacterized protein.	0.548
C3XRB1_BRAFL	C3ZZ49_BRAFL	C3XRB1	C3ZZ49	Uncharacterized protein.	Uncharacterized protein.	0.570
C3Y2V8_BRAFL	C3YEV5_BRAFL	C3Y2V8	C3YEV5	Uncharacterized protein.	Uncharacterized protein.	0.574
C3Y2V8_BRAFL	C3YIU7_BRAFL	C3Y2V8	C3YIU7	Uncharacterized protein.	Uncharacterized protein.	0.760
C3Y2V8_BRAFL	C3YIU8_BRAFL	C3Y2V8	C3YIU8	Uncharacterized protein.	Uncharacterized protein.	0.946
C3Y2V8_BRAFL	C3YYK6_BRAFL	C3Y2V8	C3YYK6	Uncharacterized protein.	Uncharacterized protein.	0.797
C3Y2V8_BRAFL	C3YYK7_BRAFL	C3Y2V8	C3YYK7	Uncharacterized protein.	Uncharacterized protein.	0.648
C3Y2V8_BRAFL	C3YYX7_BRAFL	C3Y2V8	C3YYX7	Uncharacterized protein.	Uncharacterized protein.	0.901
C3Y2V8_BRAFL	C3Z6H1_BRAFL	C3Y2V8	C3Z6H1	Uncharacterized protein.	Uncharacterized protein.	0.786
C3Y2V8_BRAFL	C3Z6H4_BRAFL	C3Y2V8	C3Z6H4	Uncharacterized protein.	Uncharacterized protein.	0.778
C3Y2V8_BRAFL	C3ZPQ2_BRAFL	C3Y2V8	C3ZPQ2	Uncharacterized protein.	Uncharacterized protein.	0.949
C3Y2V8_BRAFL	C3ZQ47_BRAFL	C3Y2V8	C3ZQ47	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.762
C3Y2V8_BRAFL	C3ZZ31_BRAFL	C3Y2V8	C3ZZ31	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.946
C3Y2V8_BRAFL	Q8MX80_BRAFL	C3Y2V8	Q8MX80	Uncharacterized protein.	Retinoic acid receptor.	0.915
C3YEV5_BRAFL	C3Y2V8_BRAFL	C3YEV5	C3Y2V8	Uncharacterized protein.	Uncharacterized protein.	0.574
C3YEV5_BRAFL	C3YYK7_BRAFL	C3YEV5	C3YYK7	Uncharacterized protein.	Uncharacterized protein.	0.491
C3YIU7_BRAFL	C3Y2V8_BRAFL	C3YIU7	C3Y2V8	Uncharacterized protein.	Uncharacterized protein.	0.760
C3YIU7_BRAFL	C3YYK7_BRAFL	C3YIU7	C3YYK7	Uncharacterized protein.	Uncharacterized protein.	0.645
C3YIU8_BRAFL	C3Y2V8_BRAFL	C3YIU8	C3Y2V8	Uncharacterized protein.	Uncharacterized protein.	0.946