(24 nodes) Dynein heavy chain, linker network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YSF5_BRAFL	Uncharacterized protein. (3019 aa)
	C3XV30_BRAFL	Uncharacterized protein. (4708 aa)
	C3XXR4_BRAFL	Uncharacterized protein. (1503 aa)
	C3XZF9_BRAFL	Uncharacterized protein. (2795 aa)
	C3Y600_BRAFL	Uncharacterized protein. (4244 aa)
	C3Y8Y3_BRAFL	Uncharacterized protein. (3769 aa)
	C3YA58_BRAFL	Uncharacterized protein. (2205 aa)
	C3YAU3_BRAFL	DHC_N2 domain-containing protein. (848 aa)
	C3YAU4_BRAFL	Uncharacterized protein. (994 aa)
	C3YFY9_BRAFL	DHC_N2 domain-containing protein. (645 aa)
	C3YFZ0_BRAFL	DHC_N2 domain-containing protein. (150 aa)
	C3YFZ1_BRAFL	Uncharacterized protein. (2894 aa)
	C3YI86_BRAFL	Uncharacterized protein. (5211 aa)
	C3YJ73_BRAFL	Uncharacterized protein. (890 aa)
	C3YWV5_BRAFL	Uncharacterized protein. (4351 aa)
	C3YYU9_BRAFL	Uncharacterized protein. (2014 aa)
	C3Z109_BRAFL	Uncharacterized protein. (4712 aa)
	C3Z2N9_BRAFL	Uncharacterized protein. (3453 aa)
	C3Z7I5_BRAFL	Uncharacterized protein. (4457 aa)
	C3ZE15_BRAFL	C2H2-type domain-containing protein. (3463 aa)
	C3ZEM0_BRAFL	Uncharacterized protein. (1573 aa)
	C3ZEM1_BRAFL	Uncharacterized protein. (666 aa)
	C3ZKM4_BRAFL	Uncharacterized protein. (5712 aa)
	C3ZNR5_BRAFL	Uncharacterized protein. (1937 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y600_BRAFL	C3YAU4_BRAFL	C3Y600	C3YAU4	Uncharacterized protein.	Uncharacterized protein.	0.546
C3Y600_BRAFL	C3YFZ1_BRAFL	C3Y600	C3YFZ1	Uncharacterized protein.	Uncharacterized protein.	0.546
C3Y600_BRAFL	C3YI86_BRAFL	C3Y600	C3YI86	Uncharacterized protein.	Uncharacterized protein.	0.578
C3Y600_BRAFL	C3Z109_BRAFL	C3Y600	C3Z109	Uncharacterized protein.	Uncharacterized protein.	0.547
C3Y600_BRAFL	C3ZE15_BRAFL	C3Y600	C3ZE15	Uncharacterized protein.	C2H2-type domain-containing protein.	0.550
C3Y600_BRAFL	C3ZNR5_BRAFL	C3Y600	C3ZNR5	Uncharacterized protein.	Uncharacterized protein.	0.555
C3YAU3_BRAFL	C3YAU4_BRAFL	C3YAU3	C3YAU4	DHC_N2 domain-containing protein.	Uncharacterized protein.	0.932
C3YAU3_BRAFL	C3YFZ1_BRAFL	C3YAU3	C3YFZ1	DHC_N2 domain-containing protein.	Uncharacterized protein.	0.718
C3YAU3_BRAFL	C3ZEM1_BRAFL	C3YAU3	C3ZEM1	DHC_N2 domain-containing protein.	Uncharacterized protein.	0.901
C3YAU4_BRAFL	C3Y600_BRAFL	C3YAU4	C3Y600	Uncharacterized protein.	Uncharacterized protein.	0.546
C3YAU4_BRAFL	C3YAU3_BRAFL	C3YAU4	C3YAU3	Uncharacterized protein.	DHC_N2 domain-containing protein.	0.932
C3YAU4_BRAFL	C3YFY9_BRAFL	C3YAU4	C3YFY9	Uncharacterized protein.	DHC_N2 domain-containing protein.	0.895
C3YAU4_BRAFL	C3YFZ0_BRAFL	C3YAU4	C3YFZ0	Uncharacterized protein.	DHC_N2 domain-containing protein.	0.946
C3YAU4_BRAFL	C3YFZ1_BRAFL	C3YAU4	C3YFZ1	Uncharacterized protein.	Uncharacterized protein.	0.554
C3YAU4_BRAFL	C3YI86_BRAFL	C3YAU4	C3YI86	Uncharacterized protein.	Uncharacterized protein.	0.540
C3YAU4_BRAFL	C3Z109_BRAFL	C3YAU4	C3Z109	Uncharacterized protein.	Uncharacterized protein.	0.546
C3YAU4_BRAFL	C3ZE15_BRAFL	C3YAU4	C3ZE15	Uncharacterized protein.	C2H2-type domain-containing protein.	0.557
C3YAU4_BRAFL	C3ZEM0_BRAFL	C3YAU4	C3ZEM0	Uncharacterized protein.	Uncharacterized protein.	0.888
C3YAU4_BRAFL	C3ZNR5_BRAFL	C3YAU4	C3ZNR5	Uncharacterized protein.	Uncharacterized protein.	0.546
C3YFY9_BRAFL	C3YAU4_BRAFL	C3YFY9	C3YAU4	DHC_N2 domain-containing protein.	Uncharacterized protein.	0.895