(5 nodes) Ubiquitin conserved site network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YZR5_BRAFL	Uncharacterized protein. (600 aa)
	C3Z9G3_BRAFL	Ubiquitin-like domain-containing protein. (1268 aa)
	C3ZRF6_BRAFL	Ubiquitin-like domain-containing protein. (77 aa)
	C3Y2C9_BRAFL	Uncharacterized protein. (609 aa)
	Rab23b	Ubiquitin carboxyl-terminal hydrolase. (488 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y2C9_BRAFL	C3YZR5_BRAFL	C3Y2C9	C3YZR5	Uncharacterized protein.	Uncharacterized protein.	0.900
C3Y2C9_BRAFL	C3Z9G3_BRAFL	C3Y2C9	C3Z9G3	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.479
C3Y2C9_BRAFL	C3ZRF6_BRAFL	C3Y2C9	C3ZRF6	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.759
C3Y2C9_BRAFL	Rab23b	C3Y2C9	C4A0A6	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.954
C3YZR5_BRAFL	C3Y2C9_BRAFL	C3YZR5	C3Y2C9	Uncharacterized protein.	Uncharacterized protein.	0.900
C3YZR5_BRAFL	C3Z9G3_BRAFL	C3YZR5	C3Z9G3	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.479
C3YZR5_BRAFL	C3ZRF6_BRAFL	C3YZR5	C3ZRF6	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.759
C3YZR5_BRAFL	Rab23b	C3YZR5	C4A0A6	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.954
C3Z9G3_BRAFL	C3Y2C9_BRAFL	C3Z9G3	C3Y2C9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.479
C3Z9G3_BRAFL	C3YZR5_BRAFL	C3Z9G3	C3YZR5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.479
C3ZRF6_BRAFL	C3Y2C9_BRAFL	C3ZRF6	C3Y2C9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.759
C3ZRF6_BRAFL	C3YZR5_BRAFL	C3ZRF6	C3YZR5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.759
C3ZRF6_BRAFL	Rab23b	C3ZRF6	C4A0A6	Ubiquitin-like domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.694
Rab23b	C3Y2C9_BRAFL	C4A0A6	C3Y2C9	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.954
Rab23b	C3YZR5_BRAFL	C4A0A6	C3YZR5	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.954
Rab23b	C3ZRF6_BRAFL	C4A0A6	C3ZRF6	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin-like domain-containing protein.	0.694