(13 nodes) Small GTPase, Ras-type network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YW62_BRAFL	Uncharacterized protein. (196 aa)
	C4A108_BRAFL	Uncharacterized protein. (194 aa)
	C3ZTX8_BRAFL	VWFA domain-containing protein. (948 aa)
	C3ZR09_BRAFL	Uncharacterized protein. (179 aa)
	C3ZMJ1_BRAFL	Uncharacterized protein. (188 aa)
	C3ZAF6_BRAFL	Uncharacterized protein. (185 aa)
	C3Z355_BRAFL	Uncharacterized protein. (201 aa)
	C3XQ95_BRAFL	Neuroblastoma RAS viral oncogene-like protein. (189 aa)
	C3Y7L4_BRAFL	Uncharacterized protein. (197 aa)
	C3YFP3_BRAFL	Uncharacterized protein. (232 aa)
	C3YK58_BRAFL	Uncharacterized protein. (159 aa)
	C3YT67_BRAFL	Uncharacterized protein. (198 aa)
	C3YXK2_BRAFL	Uncharacterized protein. (183 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQ95_BRAFL	C3ZAF6_BRAFL	C3XQ95	C3ZAF6	Neuroblastoma RAS viral oncogene-like protein.	Uncharacterized protein.	0.479
C3XQ95_BRAFL	C3ZMJ1_BRAFL	C3XQ95	C3ZMJ1	Neuroblastoma RAS viral oncogene-like protein.	Uncharacterized protein.	0.901
C3YW62_BRAFL	C3ZAF6_BRAFL	C3YW62	C3ZAF6	Uncharacterized protein.	Uncharacterized protein.	0.497
C3ZAF6_BRAFL	C3XQ95_BRAFL	C3ZAF6	C3XQ95	Uncharacterized protein.	Neuroblastoma RAS viral oncogene-like protein.	0.479
C3ZAF6_BRAFL	C3YW62_BRAFL	C3ZAF6	C3YW62	Uncharacterized protein.	Uncharacterized protein.	0.497
C3ZAF6_BRAFL	C3ZMJ1_BRAFL	C3ZAF6	C3ZMJ1	Uncharacterized protein.	Uncharacterized protein.	0.478
C3ZMJ1_BRAFL	C3XQ95_BRAFL	C3ZMJ1	C3XQ95	Uncharacterized protein.	Neuroblastoma RAS viral oncogene-like protein.	0.901
C3ZMJ1_BRAFL	C3ZAF6_BRAFL	C3ZMJ1	C3ZAF6	Uncharacterized protein.	Uncharacterized protein.	0.478